Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq329 91.5 3e-13 seq186 91.5 3e-13 seq59 91.5 3e-13 seq36 91.5 3e-13 seq8 91.5 3e-13 seq789 89.7 1e-12 seq51 87.8 4e-12 >seq329 Length=301561 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 86811 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 86752 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 86751 CCCCACGTTGGGC 86739 >seq186 Length=519264 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 243968 ATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGA 243909 Query 142111 CCCCCGCCAGAGA 142123 |||||| || || Sbjct 243908 TCCCCGCAAGGGA 243896 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 248038 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 247979 Query 142112 CCCCGCCAGAGACG-CCAGG 142130 |||||| || || | ||||| Sbjct 247978 CCCCGCAAGGGATGTCCAGG 247959 >seq59 Length=1118694 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1094764 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1094823 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1094824 CCCCACGTTGGGC 1094836 >seq36 Length=1492791 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 112743 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 112802 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 112803 CCCCACGTTGGGC 112815 >seq8 Length=3710877 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3582796 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3582737 Query 142564 CCCACATCGGGCAGAAGTCG 142583 ||||| | |||| |||| || Sbjct 3582736 CCCACGTTGGGC-GAAGGCG 3582718 >seq789 Length=37595 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 26250 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 26309 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 26310 CCCACGTTGGGC 26321 >seq51 Length=1309357 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 366631 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 366690 Query 142113 CCCGCCAGAGA 142123 ||||| || || Sbjct 366691 CCCGCAAGGGA 366701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027807762004405