Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15 147 5e-30 seq19 138 3e-27 >seq15 Length=3179940 Score = 147 bits (162), Expect = 5e-30 Identities = 179/243 (74%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||||| | || | || || ||||| || |||||||||| Sbjct 2519089 CCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGAT 2519030 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||||||| ||||| |||||||| || ||||| |||| ||| |||||| ||||| Sbjct 2519029 AACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA---TCTGGA 2518973 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| ||||| || || || ||||| |||| ||| | || Sbjct 2518972 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 2518913 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||||| | || || || || || || ||||| || ||||| || |||||| | ||||| Sbjct 2518912 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATTC 2518853 Query 288484 TAA 288486 ||| Sbjct 2518852 TAA 2518850 >seq19 Length=2240402 Score = 138 bits (152), Expect = 3e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | | || | ||| | ||| |||||| || || || ||||||| Sbjct 939661 TCCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGA 939602 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || | |||||| ||||| || || ||||||| ||| |||||| ||| Sbjct 939601 GAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 939542 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||||||| || ||||| | ||| || || || |||| |||| | || || Sbjct 939541 GACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 939482 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| || ||||| |||| ||||| ||||| | ||||||| Sbjct 939481 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATT 939433 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||| | || || || || ||||| || |||| Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| ||||| || || || || |||| |||||| || ||||||| Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTG---ATCTGGG 933694 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||| ||||| || || |||||||| || | ||| | || Sbjct 933693 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCG 933634 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || |||| || ||||| || || ||||| Sbjct 933633 ACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||| | || || || || || || || |||| Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| ||||| || || || || |||| ||| || || ||||||| Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTG---ATCTGGG 933466 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || || || || || |||||||| |||| ||| | || Sbjct 933465 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCG 933406 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| || ||||| || || ||||| Sbjct 933405 ACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||| | || || || || || || || |||| Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| ||||| || || || || |||| ||| || || ||||||| Sbjct 931915 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTG---ATCTGGG 931859 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || ||||| ||||| || ||||| |||| ||| | ||| Sbjct 931858 GGAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCA 931799 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || || || || || | || || || || || |||||| Sbjct 931798 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATT 931748 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| | |||||||||||||| ||||| || || || || Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| || || ||||||| || ||||| || || || || || || || ||| Sbjct 932107 ATCAAACGTTGCTG---ATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACG 932051 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | || ||||| | ||||| ||||| || |||| || ||| Sbjct 932050 TTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTG 931991 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 931990 ACAAAAATTTGCAT 931977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179621072919990