Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq145 147 2e-30 seq19 123 2e-23 seq192 118 1e-21 seq15 98.7 1e-15 seq11 84.2 2e-11 >seq145 Length=640502 Score = 147 bits (162), Expect = 2e-30 Identities = 827/1321 (63%), Gaps = 42/1321 (3%) Strand=Plus/Plus Query 153807 TTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT- 153865 ||||| || || || || ||||| |||||||||||||| | ||||||| || ||| Sbjct 131456 TTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCCATGTTGATG--GTTG 131513 Query 153866 --TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGA 153923 || || | |||||||| || ||||| || | |||| || | | |||||| | Sbjct 131514 ACTTCACCGAA-ATTTCCCAAACCGTTTTATACAATTCTTTTATACTGGCAGGTATGGCA 131572 Query 153924 TCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTAC 153983 ||||| || || | ||| | || | || | || ||||| || | | Sbjct 131573 TCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCCAA 131632 Query 153984 A-----AATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGC 154038 | |||| |||| ||||||| || || || || || | ||| ||| || | Sbjct 131633 AGGCCCAATTCAGTC-----AAATCTTTAAGTAAATGATGATTGACTACGATAAACTCAC 131687 Query 154039 CGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGC 154098 | | || |||||| || || | ||| ||| | ||||| || || |||||||| | Sbjct 131688 CAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGACTCGTTGTTAC 131747 Query 154099 CTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAAC 154158 | | |||||||| |||| || || ||||| || |||| |||||| || |||| | Sbjct 131748 CAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCACTC 131807 Query 154159 CGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG--TTGCAC 154216 | | ||| |||| ||| | | | | ||||||||| | | ||||| || | Sbjct 131808 CATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGTAGGCGTTTTA- 131866 Query 154217 GTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTA 154276 | |||||| || ||||| | | ||| ||| | ||||| | ||| | ||| Sbjct 131867 -TCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTCGTA 131925 Query 154277 CGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTC 154336 ||| |||| |||| ||||| | |||||||||||||| || | || |||| ||||| Sbjct 131926 CGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATATATTGTTTC 131985 Query 154337 GGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACA 154396 ||||||||| ||||| || || || |||||||| || | | || || | Sbjct 131986 AAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAACGCATTAAAAT 132045 Query 154397 AAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTC 154456 | || || || | ||||| | ||| | || | || | || |||||| |||| Sbjct 132046 TAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAAATTAGATTT 132105 Query 154457 TTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANNNNNNNNNNNNN 154516 | |||| || ||| ||||| ||||||| |||||| ||||| || | Sbjct 132106 TCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGTTCCTTGTTAT 132165 Query 154517 NNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAA----CACTCCGCTTTTAATAAAAC 154572 | | ||||||| | || || ||| || | Sbjct 132166 AAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCCGTTACGAACAT 132225 Query 154573 GATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTAC-TGTATTGC 154631 | || || | || |||| |||||||| || |||||||||| | || | |||| Sbjct 132226 ATTCAACGCA-ATTGATGCCAGATTGCAAACTGCTATTTCTTCAG-CCGACGTATATTCG 132283 Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 || ||||||| ||||| ||||||||| || ||||| | || | ||||| |||| Sbjct 132284 ACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTTTG 132343 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAAT- 154750 ||| || ||||||||||| | ||||| || || || || |||||||||| | | Sbjct 132344 CGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGGG---CGCTG 132400 Query 154751 AATTGTGCGAAACAGACTTCGCG-CCTCAACTTGACAAGTAAATCGATTTTCGCTC---- 154805 || |||||| || | || || || ||| || ||| ||| | ||| Sbjct 132401 CATATTGCGAACCACAAGTCACGAGCTTGTATTGTTTTGT---TCGCTTTACCCTCGTCT 132457 Query 154806 TCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAG 154865 ||||||| | ||||| ||| ||||| | | || || || ||| || || || Sbjct 132458 TCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGCCAGGGCAT 132517 Query 154866 CGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCC 154925 | ||| ||||| | ||||| || | | || | |||||| |||| |||| Sbjct 132518 TTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGAACAGATCC 132577 Query 154926 GGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGC 154985 || | ||||| ||| || || || || || || | || || ||| | ||| Sbjct 132578 GGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCGTATTTTTT 132637 Query 154986 TTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCG 155045 || ||||| | ||| || | || || |||||||| |||||||| |||| || | || Sbjct 132638 TTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAGCC 132697 Query 155046 CCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAAC 155102 || |||||| || ||||| || || | ||| || ||| ||| ||| |||||| Sbjct 132698 CCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAAACGCAAC 132757 Query 155103 A 155103 | Sbjct 132758 A 132758 >seq19 Length=2240402 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || | ||| | ||||| || || |||||||||||||| | Sbjct 931976 ACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGA 931917 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| | |||||||| ||| |||| | || ||||| || || || Sbjct 931916 CAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 931857 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| ||||| || ||||| | |||| ||||| ||| || | ||||| | || | Sbjct 931856 AATACCTTCCTTATCTTG-AATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAA 931798 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| | ||| | || ||||| || || ||||| || || ||||||||||| Sbjct 931797 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTT 931746 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || | ||| | ||||| || || |||||||||||||| | Sbjct 933583 ACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGA 933524 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| | |||||||| ||| |||| | || ||||| || || || Sbjct 933523 CAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 933464 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| || || | || || | || || Sbjct 933463 AATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGAC 933404 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||||||| ||||| ||||| || ||||||||||| Sbjct 933403 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || | ||| | ||||| || || ||||| |||||||| | Sbjct 933811 ACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGA 933752 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| | ||||| |||||| |||| | |||||||| || || || Sbjct 933751 CAAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGG 933692 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| ||| || || | || || | || || Sbjct 933691 AATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGAC 933632 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||||||| ||||| ||||| || ||||||||||| Sbjct 933631 TTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| |||||||| || | | |||||| | ||||| | ||| ||||| ||| | Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||||||||| |||||||| ||||| || ||||| |||||| || || Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | ||||| || | ||| | || || |||||||||||||| || Sbjct 939732 TCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACA 939673 Query 64433 AAAATTTGCATT 64444 || ||||||||| Sbjct 939672 AATATTTGCATT 939661 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | | |||||| | ||||| | ||| ||||| Sbjct 941620 GTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCA 941561 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||||||||| |||||||| ||||| || ||||| | |||||||||| Sbjct 941560 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGA-TTTTTGCTTT 941502 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | ||||| | ||||| || | ||| | || || ||||||||||| Sbjct 941501 AACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGT 941442 Query 64426 TTT 64428 ||| Sbjct 941441 TTT 941439 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||||||||| | | ||||| ||||||| | |||||||| ||| || Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | || ||||| || || ||||| ||||| || ||||| || || ||| || Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | || ||||||| || | ||||||||| ||||| ||||| || Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 64433 AAAATTTGCAT 64443 ||||||||||| Sbjct 931987 AAAATTTGCAT 931977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||| | |||||||||||| ||||||||||| || | || ||||| | | ||| | ||| Sbjct 939637 ATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCTAACTG 939578 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||||| ||| | || | || || || || || || | ||||||||| ||||| ||||| Sbjct 939577 TTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTT 939518 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 || ||| ||| | ||||| | || || || | || | || || || || Sbjct 939517 AGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGT 939458 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 ||| || || ||||| | |||||||||| || Sbjct 939457 CAATGTCTTCACGAAGACCTGCATTTTAAAAA 939426 >seq192 Length=539225 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | | ||| ||||| | || |||||||||||||| || ||||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||||| ||||| |||| | || ||||||||||| ||| Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || || || |||||| || | || || || || || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| || | |||||||| ||||| ||||| || Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 >seq15 Length=3179940 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||| || || | | ||||| | ||||| | || ||||| Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || |||||||| |||||||| || || ||||| ||| Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| | ||| | || ||||| || | |||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 64427 TTTACGAAAATTTGCATTTTAATA 64450 || ||||||||||||||||| ||| Sbjct 2518879 TTAACGAAAATTTGCATTTTTATA 2518856 >seq11 Length=3471450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 ||| | || ||||||||||||||||||||||| |||| | ||||| ||||| || ||| Sbjct 883999 GGATTACATGGTTTTCATGTTCACGAATTCGGGGACAACACTAACGGTTGCACTTCTGCC 883940 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 || | |||||| || || | || |||| || || ||||| | | | || || Sbjct 883939 GGTGCGCATTTTAATCCTTGCAAAAAAGAGCATGGAGCACCCACTGATGATGAGCGTCAT 883880 Query 115481 GTCGGTGATCTGGGCAACGTCGAATC 115506 |||||||| ||||||| || || || Sbjct 883879 ATCGGTGATTTGGGCAATGTTGAGTC 883854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499631028540200