Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq145 161 1e-34 seq19 114 1e-20 seq192 93.3 4e-14 seq15 84.2 2e-11 >seq145 Length=640502 Score = 161 bits (178), Expect = 1e-34 Identities = 694/1084 (64%), Gaps = 25/1084 (2%) Strand=Plus/Plus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 || || ||||||||| | | || || ||||| || | | ||||||||| || ||| Sbjct 131324 TCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCGGTT 131383 Query 152745 TTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGC 152804 || | |||| | ||| ||| || || |||| | | | || | |||| Sbjct 131384 TTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGTTCA 131443 Query 152805 GCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATC 152864 || ||| | |||||| ||||| || || || || |||||| || || | ||||| Sbjct 131444 GCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCCATG 131503 Query 152865 TCAATCATGCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCC 152924 | || | || || || ||||| | ||||| ||||| | ||| | || | Sbjct 131504 TTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTGGCA 131563 Query 152925 GGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT--AGCGTTTCGTATT- 152981 ||||| | |||||||| || || ||||| ||||| || || || |||| | || Sbjct 131564 GGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTA 131623 Query 152982 TCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGA 153041 || | | | | || || | | | || | | || | || ||||| || | Sbjct 131624 TCATTCC---AAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTACGATA 131680 Query 153042 AACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCG 153101 ||||| || | || || |||| || | ||| |||| | || ||||| || ||| Sbjct 131681 AACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGACTCG 131740 Query 153102 TTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTC 153161 || || || || |||||||| || | ||||| ||||| || |||| ||||||||| Sbjct 131741 TTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGAATTG 131800 Query 153162 CGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGT 153221 |||| || | | ||||||||| || | || ||||| ||| || | | || Sbjct 131801 CGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGTAGGC 131860 Query 153222 GTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTA 153281 || | |||||| || || || | | ||| ||| | ||||| || || | || Sbjct 131861 GTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTT 131920 Query 153282 CTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATG 153341 ||| |||| ||| ||||| || || || || || | || || || ||||| Sbjct 131921 TCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATATATT 131980 Query 153342 GTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTCTCGTACGGCATGCGCAG 153400 ||||| ||||||||||| | | ||||| || | |||||| ||||| || |||| Sbjct 131981 GTTTCAAAAATTTGTTTATTTA-AGCGGCCAGCATTTTCGCTTTCGTAGGGATAACGCAT 132039 Query 153401 CAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGC------TT 153454 | | | ||||| || | || |||| || | ||||| || ||||| || Sbjct 132040 TAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAAATT 132099 Query 153455 CTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAG 153514 || ||| || || || || ||||||| |||| |||||| ||||||||||| Sbjct 132100 AGATTTTCTG-GCTTCCGGCA-GC----GGATAGTAATTGACATCGATTATTTTGTTGAG 132153 Query 153515 GTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTC 153574 ||| | | | || | | | || ||||| | |||||||| | ||| Sbjct 132154 GTTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATA--TTGTTTATCT 132211 Query 153575 GACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC 153634 | || |||| | ||||| ||||| || |||||||| || || || | ||||| || Sbjct 132212 GCCGT-TACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGC 132270 Query 153635 -GTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTT 153693 | || | || | ||||| || | || | ||| ||||||||||| ||| | ||| | Sbjct 132271 CGACG-TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCT 132329 Query 153694 GCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA 153753 | ||||| |||||||| || || ||||||||| | |||||||| || |||||||| | Sbjct 132330 GTTGATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCA 132389 Query 153754 CTTG 153757 |||| Sbjct 132390 CTTG 132393 >seq19 Length=2240402 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 |||||||| ||||||||||| || || ||| || || | ||||| || | | || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTG 138542 || | |||||| ||||| ||||| |||||||| ||||| || |||||||||||| | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGGATTTTTGTTTTAACGTT 939734 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | || || | || |||||||| | || | |||||| || |||| |||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 138603 AAAAATCTGCAT 138614 ||| || ||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 138383 CGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGT 138442 |||| || || || | |||||| || || || | | || |||||||| |||||||||| Sbjct 941654 CGCA-CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGT 941596 Query 138443 CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 | || || ||| || || | ||||| || | | |||| | |||||| ||||| | Sbjct 941595 CAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 941536 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACT 138562 |||| |||||||| ||||| ||||||| ||| | | ||| | || || | || | Sbjct 941535 GAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATT 941476 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||||||| | || | |||||| || |||| |||||| Sbjct 941475 CCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | |||||||| ||||||||||| ||| | Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | ||| || || | | | || | ||| || || || || || Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| | || | || | | ||| | ||||||| | ||| || Sbjct 933462 ATACCTTCCTTGTC-TTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGAC 933404 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||||| |||||||| ||||| Sbjct 933403 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138422 ACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 ||||||| ||||||||||| ||| || ||| || ||| || | ||| || || | | Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAAT 138540 | || | ||| || || || || || |||||||| ||||| ||| | || | || | Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTC-TTGAATCTTGGCCTTGACG 932051 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | ||| || || | || | || || ||||||| ||||| Sbjct 932050 TTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTG 931991 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 931990 ACAAAAATTTGCAT 931977 >seq192 Length=539225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||||||||||||| || | ||||| | | || || |||||||| || || ||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || |||| | || | || || ||||| || || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | || | ||||| | ||| | ||||| | | || || Sbjct 278308 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 278250 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || |||||||||||||||||||| Sbjct 278249 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq15 Length=3179940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 10/199 (5%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC----TCGAGTTGTTTACC 138476 ||||||||||| ||||| |||||| ||| ||| | |||| || | |||||| || Sbjct 2519056 GACTCCTTTTGTATGTTATAGTCG--GATA--ACGTGCGTCCATCTTCCAATTGTTTGCC 2519001 Query 138477 GGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TT 138535 | | || | ||| ||||| || ||||| || |||||||| || ||| |||| | | Sbjct 2519000 AGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATC-CTGAATTTTGGCCT 2518942 Query 138536 TTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 | | | ||| | ||||||| | ||| || || | || | ||||| ||||| |||| Sbjct 2518941 TGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAG 2518882 Query 138596 TTTTTACAAAAATCTGCAT 138614 |||| || ||||| ||||| Sbjct 2518881 TTTTAACGAAAATTTGCAT 2518863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248721767600