Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq192 134 1e-26 seq19 125 5e-24 seq15 122 6e-23 seq11 84.2 2e-11 >seq192 Length=539225 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | || || | ||| | ||| || |||||||| || || |||||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCG--G 278371 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| ||||| || || ||| | ||||| || || |||||| || Sbjct 278370 ACAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTG 278311 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| || ||||| ||| ||| ||||||| |||| ||||| || ||| | Sbjct 278310 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 278251 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 278250 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 >seq19 Length=2240402 Score = 125 bits (138), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || ||||| | || || || || || |||||||||||| | Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCG--G 933525 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || ||||||| ||||| |||||||| | |||||||| || || || | Sbjct 933524 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 933465 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| ||| || || |||| ||||| ||| | || | Sbjct 933464 GAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGA 933405 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||||||| ||||| || || |||| ||||| ||||||||||||||| Sbjct 933404 CTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 933355 Score = 123 bits (136), Expect = 2e-23 Identities = 173/238 (73%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || ||||| | || || || || || |||||||||||| | Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCG--G 931918 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | ||||||| ||||| |||||||| | |||||||| || || || | Sbjct 931917 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 931858 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 |||| |||||||| || |||||| ||| ||| |||| |||||||| | || ||| Sbjct 931857 GAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATC-CGATGGTTCA 931799 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || || ||||| ||||| || || | ||||| ||||| |||||||| ||| ||| Sbjct 931798 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTTTTAAA 931741 Score = 122 bits (134), Expect = 6e-23 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGT 15043 || |||||||||||||| || || ||| ||| ||||| || ||||||||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCA--GACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAA 939795 Query 15044 ATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAA 15103 | ||||||||||| ||||| ||||| ||||||||||| ||||| |||| || Sbjct 939794 AGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGT 939735 Query 15104 TTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTT 15162 |||| |||||||| | || ||| || || || || || ||||| || |||| |||||| Sbjct 939734 TTTCGATAGTATC-CGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTG 939676 Query 15163 ACAAAAATTTGCAT 15176 ||||| |||||||| Sbjct 939675 ACAAATATTTGCAT 939662 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || || || |||||||||||| | | | | ||||||| ||||| |||||||| | Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 |||||||| || || || ||||| ||||||||||| ||| ||| || || || Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || ||||| ||| | || || |||||||| ||||| || || |||| ||||| ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 15166 AAAATTTGCATA 15177 |||||||||||| Sbjct 931987 AAAATTTGCATA 931976 Score = 114 bits (126), Expect = 9e-21 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | |||||| ||||| || || || ||||| || |||||||| ||| | Sbjct 939660 CCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAG 939601 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | |||||| ||||||||||| | |||||||| ||||| || ||| Sbjct 939600 AGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 939541 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | |||||| || || |||||| |||| ||| | || ||||||||| || || Sbjct 939540 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 939481 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| || ||||| || |||| || || || || | ||||| ||| ||| Sbjct 939480 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCAT-TTTAAAA 939427 Score = 109 bits (120), Expect = 4e-19 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG--T 15022 || || || || || ||||| || |||||||||||||| || || ||| ||| | Sbjct 941635 AACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCA--GACAATGTGCGCCCAT 941578 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||||||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 941577 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 941518 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATG 15141 | ||||| ||| || |||| |||||||| | || ||| || || || || || Sbjct 941517 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATC-CGATGATTCCACCTCCAAAGTGATC 941459 Query 15142 GTTTTACCTGTCAGAGTTTT 15161 ||||| || |||| |||||| Sbjct 941458 GTTTTTCCGGTCAAAGTTTT 941439 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || ||||| | || || || || || || ||||||||| | Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCG--G 933753 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || ||||||| ||||| || || || | ||||||||||| || || | Sbjct 933752 ACAAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGG 933693 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| || || |||| || || ||| | || | Sbjct 933692 GAATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGA 933633 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||| ||| ||||| || || |||| ||||| ||||||||||||||| Sbjct 933632 CTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 933583 >seq15 Length=3179940 Score = 122 bits (134), Expect = 6e-23 Identities = 150/203 (74%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGC 15037 || || || ||||||||||| || ||| || || || | ||||| |||||||||| Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCG--GATAACGTGCGTCCATCTTCCAATTGTTTGC 2519002 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 ||||| | |||||||| ||||| || ||||| ||||| || || ||||||| | Sbjct 2519001 CAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCT 2518942 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | ||| |||| ||||| ||| | || || || || ||||| ||||| || || |||| Sbjct 2518941 TGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAG 2518882 Query 15158 TTTTTACAAAAATTTGCATATTT 15180 |||| || ||||||||||| ||| Sbjct 2518881 TTTTAACGAAAATTTGCATTTTT 2518859 >seq11 Length=3471450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 90688 GGATTAAAATGTTCGCCCGCAGATGTGCAACCGTTAGTTGTGTCACCAAATTCGTGCACA 90747 ||||||||||| | || ||||| |||||||||||||| |||| || |||||||| ||| Sbjct 883923 GGATTAAAATGCGCACCGGCAGAAGTGCAACCGTTAGTGTTGTCCCCGAATTCGTGAACA 883982 Query 90748 TGAAAACCGTGCAAACCTTTTGGTAA---ATTTAAAATGTATCCAGAAATTTTGAC 90800 |||||||| || || || || | ||| |||| || | ||||| | |||||| Sbjct 883983 TGAAAACCATGTAATCCCTTAGATAATCCATTT---ATCTCTCCAGTTACTTTGAC 884035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382395648425