Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq145 159 3e-34 seq192 150 2e-31 seq15 149 6e-31 seq19 118 1e-21 seq11 84.2 2e-11 >seq145 Length=640502 Score = 159 bits (176), Expect = 3e-34 Identities = 877/1384 (63%), Gaps = 43/1384 (3%) Strand=Plus/Minus Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 |||| || ||||||| ||| | | ||| ||| ||||||| ||| || | ||| | Sbjct 132680 TAGAGCCTTGGCACGCAGATATTTTCGAATTTCTAAATTTGAAAAAAAATACGGGTAAAG 132621 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 | || | || || || || || || ||| | ||| |||| ||| |||| ||| | Sbjct 132620 AGGAGGATCGTGCACGGGACTTATTTTATGCTCTGTGGATACCGGATCTGTTCATGAAAA 132561 Query 123433 GCGTAAAAGACGACG-GCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGC 123491 | || | | || | || | ||||| || ||||| ||| || || || |||||| Sbjct 132560 GAGTGGAGGCTGATGAGCAT-TGGTCTCTAATGTGCCCCCATAAATGCCCTGGCTTGGAA 132502 Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAG 123551 || ||||| || | | |||||| | |||||| |||| || ||| || ||| | Sbjct 132501 GAAGTTTATGGAGACAAATTTGACAAATTGTACATAAAATATGAAGACGAGGGTAAAGCG 132442 Query 123552 GTTAGTCAGGTTCCGGCACGTGATTTGT---TCAAATTTATTATCGAAACACAAGTCGAA 123608 | | | || ||||| |||| || | | | || | ||||| || Sbjct 132441 AACAAAACAATACAAGCTCGTGACTTGTGGTTCGCAATATGCAGCG---CCCAAGTGGAG 132385 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 |||||||| || |||||||| ||||||||||| || ||| | |||| ||||| || Sbjct 132384 ACCGGAACTCCTTACATGCTTTACAAAGACGCTTGTAACCGCAAAAGTAATCAACAGAAT 132325 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGAT 123728 | || || |||||||| ||||| | || | ||||| ||||||| | || || Sbjct 132324 GTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATACGTCGGCTGAA 132265 Query 123729 CAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT-GAATCGTTGCGTCGAAAACGGC-G 123786 || | || || || ||| |||| || ||| |||| |||| | ||| |||||| | Sbjct 132264 GAAATAGCAGTTTGCAATCTGGCATCAATT-GCGTTGAATATGTTCGT----AACGGCAG 132210 Query 123787 CT------TTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 | | | |||| || | |||||| | |||| | || || ||| | | Sbjct 132209 ATAAACAATATGATTTTCACAAACTCAAAGAAGTTGCAAAGCTTATAACAAGGAACCTCA 132150 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 ||||||| |||||||| |||| ||||| || |||||| | |||||||| | Sbjct 132149 ACAAAATAATCGATGTCAATTACTATCCGCTGCCGGAAGCCAGAAAATCTAATTTACGTC 132090 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 | | || |||| | ||| | ||||| || || ||||| | | | |||| | Sbjct 132089 ATCGTCCAATCGGTATAGGCGTCCAAGGATTTGCTGACGCACTAATTTTAATGCGTTATC 132030 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAA-TACGCAAATAGCCGAAACAATTTATTAC 124019 | ||||||||||| | || | |||||| || ||||| |||||||| |||||| Sbjct 132029 CCTACGAAAGCGAAAATGCTG-GCCGCTTAAATAAACAAATTTTTGAAACAATATATTAC 131971 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 || || || || || || || || | || ||| |||| ||||||||| || | Sbjct 131970 GGTGCCTTAGAAGCCAGTTGTCAATTGGCCAAACAATACGGTCCGTACGAAACATATGAA 131911 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 || || || | || |||||| | || || || |||||| || || || || || Sbjct 131910 GGTAGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGATAAAACGCCTACTGAT 131851 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTG 124199 | ||| | ||| || | | ||| | ||| | | || |||| || || || Sbjct 131850 CTATGGAATTGGTCCGCTCTTAAAGACGACATTAAAAATTATGGAGTGCGCAATTCTTTG 131791 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 |||| || ||||| || || | |||||||||||| | || |||||||| || || Sbjct 131790 CTGGTAGCTCCAATGCCTACCGCGTCTACTGCTCAAATTCTTGGTAACAACGAGTCTTTT 131731 Query 124260 GAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATA 124319 ||||| | |||| ||| | ||| ||||| || | | || || ||| || | Sbjct 131730 GAGCCATACACTTCAAATATTTACACACGACGCGTACTGTCTGGTGAGTTTATCGTAGTC 131671 Query 124320 AATCATCATTTGGTGGACGACTTGGTGGCGTT--AAATTTGTACGATGAAAACATGCGCA 124377 ||||||||||| | | || ||| | || |||| | |||| |||||| | Sbjct 131670 AATCATCATTTACTTAAAGATTTGACTGAATTGGGCCTTTGGA--ATGATAACATGAAAA 131613 Query 124378 ACGAAATTATTGCGGCCGGTGGCAGC---GTGCAGCGCATCGCTTCGATTCCGGAACACG 124434 || || |||| ||| | || || | || ||| | | | || || | Sbjct 131612 ACTTAA-TATT--GGCACATCGCGGCTCAATACAAAACATTGATGCCATACCTGCCAGTA 131556 Query 124435 TCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATG 124490 | || || |||| ||||| || |||||||| | || | ||| || | | ||| Sbjct 131555 TAAAAGAATTGTATAAAACGGTTTGGGAAATTTCGGTGAAGTCAACCATCA----ACATG 131500 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAA 124550 || || || || ||||| | | || ||||||||||| ||||| | ||||| ||| Sbjct 131499 GCTGTTGATCGCGGCGCTTTTATCGACCAAAGTCAATCATTTAATATACACGTAGCTGAA 131440 Query 124551 CCCACCTACGCCCGCATGACCAGC-ATACACATGCACGCGTGGAGCAGCGGACTCAAAAC 124609 || | || | || | | | ||||| | | | ||||| ||| | ||||| Sbjct 131439 CCTAGTTATG-GTAAATTATCTTCTATACATTTTTATGGTTGGAGAGCCGGCTTAAAAAC 131381 Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 || |||||||| ||||||| || || || || || |||| || ||||| ||||| || Sbjct 131380 CGGTATGTATTATCTAAGAACGAAGCCAGCAGCAAATCCCATACAGTTTACAGTCGATAA 131321 Query 124670 ATCT 124673 | || Sbjct 131320 AACT 131317 >seq192 Length=539225 Score = 150 bits (166), Expect = 2e-31 Identities = 178/239 (74%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 || |||| ||| || || | | |||||| ||||| | || ||||| ||||| ||||| Sbjct 278438 TTTTTTTGCTCCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATT 278379 Query 45164 ATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 ||||||| ||| | | || ||| |||||||| ||||| ||| | |||||||||||| Sbjct 278378 ATAATCG--GACAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGC 278321 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 ||||| || ||||| || ||||| || ||||| || ||| | ||| | ||||| Sbjct 278320 TGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCC 278261 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||| | || ||||| ||||| |||||||||||||| ||||| Sbjct 278260 GAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq15 Length=3179940 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 |||| || |||||||| | | || | |||| || || |||||||| || ||||| | Sbjct 2519094 TTATGCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGT 2519035 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | || ||| ||||||||||| || ||| | ||||| ||||| || || | Sbjct 2519034 CGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTG 2518975 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||||||||| |||||||| |||| ||| | |||||||||| || Sbjct 2518974 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 2518915 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||||| |||||||| || |||||||| || ||||||||||| Sbjct 2518914 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 2518863 >seq19 Length=2240402 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || | ||||| || || ||||| || ||||| |||||| Sbjct 933813 ATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCG 933754 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||| || || || | ||||| || ||||| || || Sbjct 933753 GACAAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGG 933694 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || |||||||| |||| ||| | ||||||||||| |||| Sbjct 933693 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCG 933634 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || | ||||| |||||||||||||| Sbjct 933633 ACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || | ||||| || || ||||| || || || |||||| Sbjct 931978 ATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCG 931919 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||| || || || | ||||| |||||||| || || Sbjct 931918 GACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGG 931859 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| |||||||||||||| ||| | ||| | || || || | || Sbjct 931858 GGAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCA 931799 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 931798 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || | ||||| || || ||||| || || || |||||| Sbjct 933585 ATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCG 933526 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||| || || || | ||||| |||||||| || || Sbjct 933525 GACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGG 933466 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| || |||| ||| | |||||||||| |||| Sbjct 933465 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCG 933406 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || ||||| || | ||||| |||||||||||||| Sbjct 933405 ACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | |||||| | || || || ||||||||||| || || || | | | Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGT--CAG 941593 Query 45174 ACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| ||||| ||||| || || | ||||| || |||||||| || | Sbjct 941592 ACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 941533 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| || ||||| |||||| ||| | ||| | || || || || || | Sbjct 941532 GAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCA 941473 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTT 45325 | || | ||| | |||||| ||||| | |||||| Sbjct 941472 CCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||| |||||||| || || ||||| ||||| || Sbjct 932131 TCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 932072 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| ||| | |||||||||| ||||||||| | || | Sbjct 932071 TCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATG 932012 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||| |||||||||||||| Sbjct 932011 GTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 931977 >seq11 Length=3471450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 102401 GGGCGCACCATGATCCATGTTGAACGGATTGAAATGTTCGCCGGCCGAGGTGCATCCGTT 102460 ||| || ||||| || | ||| | ||||| ||||| | ||||| || ||||| ||||| Sbjct 883898 GGGTGCTCCATGCTCTTTTTTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAACCGTT 883957 Query 102461 GCTCATGTCTCCGAATTCGTGAACGTGAAAGCCGTGCAAACCTTTCGACAAACCGATTAT 102520 | |||| |||||||||||||| ||||| || || || || || || || || |||| Sbjct 883958 AGTGTTGTCCCCGAATTCGTGAACATGAAAACCATGTAATCCCTTAGATAATCCATTTAT 884017 Query 102521 GTAGCCAGTTA 102531 | ||||||| Sbjct 884018 CTCTCCAGTTA 884028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990741661800