Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq162 82.4 9e-11 seq54 82.4 9e-11 >seq162 Length=671509 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| || | | || || ||||||||||| | |||||| | || || ||||| Sbjct 552046 ATCTTTGCCGCCAGTTAAGCGGGTACCAAATTGACCTCTTGGCTCCAACAGGTTTATATT 551987 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 || ||||||| ||| | | |||||| || || || || || || | || | ||||| Sbjct 551986 ATTCGAGCCCACATAATTTTGCGCCAAATTCACTATAGTCATTTGC-AAAGACATTTCAC 551928 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCA 176099 | ||||| || || ||| | |||||||| | | | || ||||| || |||| Sbjct 551927 CATGATGATAAGCGGACATTTCCGCCACGGATCCAGATAATTGCGCAACTTTCA 551874 >seq54 Length=1154455 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || ||||||||||||||| || | ||||| | |||||||| | ||||||||| || Sbjct 76924 TCAAAGCCATCCATCTCAACTAATAACTGATTTAATGTTTGTTCTCTTTCATCATT-GCC 76866 Query 12849 GGCATACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 | || ||| || ||| | || |||| || || || ||||| || || |||| Sbjct 76865 GCCA--CCAAGACCAATGCCACGATGTCTACCCACCGCATCTATTTCATCTATAAAAATT 76808 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 ||||| || ||||| | | ||||| ||||| || || | | ||||| ||| Sbjct 76807 ATACAAGGAGCATTTTTCTTGCCTTGATCAAACATATCACGAACACGACTTGCACCAACA 76748 Query 12966 CCCACAAACATCTCCACAAAAT 12987 ||||||||||| || ||||||| Sbjct 76747 CCCACAAACATTTCAACAAAAT 76726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490290207800