Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19 132 1e-25 seq192 111 4e-19 seq15 107 5e-18 >seq19 Length=2240402 Score = 132 bits (146), Expect = 1e-25 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||||||||| || |||||||| | ||||||||||| ||| || | |||||||||| ||| Sbjct 941627 GTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTG 941568 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || || ||||| | |||||||||||| ||| ||| ||||| || || || || Sbjct 941567 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TT 941509 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 |||| || ||| ||||| || || | || ||| || ||||| |||||||| || || | Sbjct 941508 TTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGG 941449 Query 199605 TGAGAGTTTT 199614 | | |||||| Sbjct 941448 TCAAAGTTTT 941439 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 |||||||| | ||||||||||| ||| || | |||||||||| ||| || || || ||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | |||||||||||| ||| ||| ||||| || || || ||| || ||| | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| || || | || ||| || ||||| |||||||| || || || | |||||| ||| Sbjct 939732 TCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACA 939673 Query 199619 AAAATTTG 199626 || ||||| Sbjct 939672 AATATTTG 939665 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| || | ||||| || | ||| || | ||| ||||||| ||||| ||| Sbjct 933780 GTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTACCG 933721 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | ||||||||| || || ||| ||||| |||||||| || ||| Sbjct 933720 GCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATTTTAGCCTTG 933661 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | |||||| | | || || || | ||||| ||||| || || | ||| Sbjct 933660 ACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTT 933601 Query 199613 TTCACAAAAATTTG 199626 || ||||||||||| Sbjct 933600 TTGACAAAAATTTG 933587 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| || | |||||| || | ||| || | ||| ||||||| ||||| || Sbjct 933552 GTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 933493 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | ||| ||||| || || ||| ||||| || |||||||| ||| Sbjct 933492 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTG 933433 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | ||||| | | || || || || ||||| ||||| || || | ||| Sbjct 933432 ACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTT 933373 Query 199613 TTCACAAAAATTTG 199626 || ||||||||||| Sbjct 933372 TTGACAAAAATTTG 933359 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496 ||||||| || | |||||| || | |||||| | ||| ||||||| ||||| || || | Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGG 199556 | || | ||| ||||| || || ||| ||||| || |||||||| ||| ||| Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGT 932050 Query 199557 ATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCA 199616 ||| | ||||| | | || || || || ||||| ||||| || || | ||||| | Sbjct 932049 TTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGA 931990 Query 199617 CAAAAATTTG 199626 |||||||||| Sbjct 931989 CAAAAATTTG 931980 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| || | |||||| || | ||| || | ||| ||||||| ||||| || Sbjct 931945 GTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 931886 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | ||| ||||| || || ||| ||||| || ||||| ||| |||| Sbjct 931885 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT-TTTAGCTTT 931827 Query 199553 A-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 | | ||||| || || | || ||| || ||||| || || || || || || | || Sbjct 931826 AACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGT 931767 Query 199612 TTTCACAAAAATTTGGTACATTTT 199635 ||||||||| ||||| |||||| Sbjct 931766 TTTCACAAAGATTTG---CATTTT 931746 >seq192 Length=539225 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || | || || || ||||| | || || || | ||| || | ||||||||| Sbjct 278410 ACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 278351 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||||||||||| || | || |||||||| || |||||| ||| |||||| Sbjct 278350 AATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 278291 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || || ||||| ||||| | | ||| || || | ||||| ||||| Sbjct 278290 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 278231 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| |||||||| || Sbjct 278230 CCCGTTAGGGTTTTTACAAAAATCTG 278205 >seq15 Length=3179940 Score = 107 bits (118), Expect = 5e-18 Identities = 146/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | ||| ||||| | || || | ||||||||||| || || || Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||| || || || ||| ||| |||||| |||||||| || ||| Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | | || || ||||| || || || || || || |||||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || || |||||||| |||||| Sbjct 2518879 TTAACGAAAATTTG---CATTTT 2518860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178888293622735