Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq192 123 2e-23 seq19 120 2e-22 seq15 113 3e-20 >seq192 Length=539225 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||||||||| || | ||| || ||| ||||||||| ||||||||||||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || ||| | ||||| || || ||||| || | || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| | || || | || || ||| || ||||| | | ||| | Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATA--GTGTCCGAGGGTTCGA 278251 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || ||||||| |||||||| || |||||||| Sbjct 278250 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq19 Length=2240402 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||||||| || || || || || || ||||||| | Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || |||||||| || || ||||||| ||||| |||||||| | ||| Sbjct 931915 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 931856 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || ||||| |||| || ||| || || || | ||| | Sbjct 931855 ATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATA--GTATCCGATGGTTCAA 931798 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 931797 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||||||| || || || || ||||| ||||||| | Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || |||||||| || ||| ||||||| |||||||||||||| | ||| Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 933691 Query 39613 ACGCCTTCTTTGTC 39626 | ||||| ||||| Sbjct 933690 ATACCTTCCTTGTC 933677 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||| |||||||| || || || | | Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGAC 941591 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||| ||||| || |||| || ||||||||||| || | || Sbjct 941590 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 941531 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| |||||| ||||| | ||| || || || | ||||| Sbjct 941530 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA--GTATCCGATGATTCCA 941473 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 | |||||||| || ||||| || || |||||||| Sbjct 941472 CCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || |||||||| || || || | ||| ||| |||| ||||| ||||| || |||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || ||||||||||| || | || | ||||| ||||| |||||| ||||| | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| || || || | |||||| |||||||| || ||||| || || |||||||| | Sbjct 939732 TCGATA--GTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGA 939675 Query 39707 CGAAGATCTGCAT 39719 | || || ||||| Sbjct 939674 CAAATATTTGCAT 939662 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||||||| || || || || || || ||||||| | Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || |||||||| || || ||||||| ||||| |||||||| | ||| Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 39613 ACGCCTTCTTTGTC 39626 | ||||| ||||| Sbjct 933462 ATACCTTCCTTGTC 933449 >seq15 Length=3179940 Score = 113 bits (124), Expect = 3e-20 Identities = 172/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| || || | ||| |||||||| ||||| || || |||||||| ||| Sbjct 2519097 CAATTAT-GCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTA 2519039 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| || |||| |||| ||||||||||| || | ||||| ||||| || ||| Sbjct 2519038 TAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA 2518979 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCT 39660 || | || | ||||||||| || | | |||| | || | || || || ||||| Sbjct 2518978 TCTGGAGGAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATA--GTGTCG 2518922 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || ||||||||||| ||||| || || | |||||| ||||| || ||||| Sbjct 2518921 GAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 2518863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360264984765