Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq234 183 3e-41 seq192 113 5e-20 seq15 111 2e-19 seq19 102 8e-17 >seq234 Length=462357 Score = 183 bits (202), Expect = 3e-41 Identities = 386/576 (67%), Gaps = 20/576 (3%) Strand=Plus/Minus Query 132862 CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 ||||| ||| | |||||| || ||||| || ||||| || || |||||||| || Sbjct 280797 CTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCA 280738 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | || || | ||| || ||| || || || ||||| | || ||||| || ||| Sbjct 280737 TCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGC 280678 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 |||||||| | ||||| ||||| |||||| | || |||||||| |||||||| | Sbjct 280677 CAAAATATCGAAGCGAAGCTGCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATT 280618 Query 133042 AGGCGCTCGCCGAACGTGGC----TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 | ||||| || || | || | | || | ||||| || |||||||| || Sbjct 280617 ACACGCTCACCAAAATTAGCCGAATGCGATGAT----ATCCAAGCTAGAGCCCATTCCGC 280562 Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA------CGGAGTTTCTC 133151 ||| | || || | ||||| || || ||||| || || | | || ||| || Sbjct 280561 CTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCACGTTCTTTTTC 280502 Query 133152 TTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 ||| | | || || ||||| || ||||||||||||||| || || || Sbjct 280501 ATCCATGATA------TATGTTTCGATAAGTAAACTATACATTTCCGAGTGCACATTTTC 280448 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 |||||| |||||||| || |||||||| || || ||| | || || ||||| | || Sbjct 280447 CATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCGGTTATTTGAACCTCTTGGGAAAA 280388 Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 || || || | ||| || || || || || ||| || || ||||| |||| || || Sbjct 280387 TCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACATG 280328 Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAG 133391 || ||||| || ||| |||| | || || | ||| ||| | |||| || || || Sbjct 280327 TGAAATAAAATGCCGTTCGCCGTCGCTTAACCGATTCCAATCGTCCATGTCTTTAGAGAG 280268 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 || |||||||| | |||||||| || || || || Sbjct 280267 ATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCCGC 280232 >seq192 Length=539225 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || |||||||| || |||||||| |||||||| | || ||||| || Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || || | ||||||||||||||||| ||||| Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | |||| ||| || || || |||| || | ||||| | ||| || Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| | || | ||| | ||| |||||||| |||| || Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428 >seq15 Length=3179940 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| || || |||||||| || || | || || ||| | Sbjct 2518860 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 2518919 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | ||| | || | ||||| | || ||||| || ||||| | || Sbjct 2518920 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 2518979 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | |||| ||| |||||||| |||| || | ||||| | |||||| Sbjct 2518980 CAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTAT 2519039 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||||| |||| |||| ||||| || ||| Sbjct 2519040 AACATACAAAAGGAGTCGACATTGCACTTGGTACTCCGT 2519078 >seq19 Length=2240402 Score = 102 bits (112), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 ||||| |||||| |||||||| ||||| || || ||||| | ||||| ||||| | | Sbjct 941495 AAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGA 941553 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||||||| |||| || | |||||| | ||||||||||| ||||||| Sbjct 941554 TCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGG 941613 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||||| ||||| Sbjct 941614 AATCTACTCTCCACTTGGTGTTGCGT 941639 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || ||||| | || || ||||| ||||| | || || || | | Sbjct 939661 AATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATC 939720 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| ||||| |||||||| ||||| || || ||||| | |||| Sbjct 939721 GGATACTATCGAAAACG-TTAAAACAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 939779 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||||||| |||| || | |||||| | ||||||| Sbjct 939780 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACA 939839 Query 38422 ACATCCAAAAGGA 38434 |||| |||||||| Sbjct 939840 ACATACAAAAGGA 939852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || ||||| | || |||||||| || || | || || || | Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 931805 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| |||||| ||||| | || || || || |||||| | || Sbjct 931806 TCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGAT 931865 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | |||| || ||||| || |||| |||| |||||| | ||| ||| Sbjct 931866 CAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTAC 931925 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||||| |||| |||||||||| || ||| || | || || Sbjct 931926 AACATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| | ||||| || || | || || ||||| |||||| | || || ||| | Sbjct 939431 AAAATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 939490 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | ||||| ||||| | || ||||| ||| | || | || Sbjct 939491 TCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 939550 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || ||||||||| | || | | ||||| ||| ||||||| Sbjct 939551 CAACAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTCCGACTAC 939610 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||| || || ||| ||||||| |||||||| Sbjct 939611 AACATTCAGAAAGAATCGACGCTCCATTTGGT 939642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159013987200