Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq145 104 3e-17 seq54 84.2 3e-11 >seq145 Length=640502 Score = 104 bits (114), Expect = 3e-17 Identities = 443/691 (64%), Gaps = 43/691 (6%) Strand=Plus/Minus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 ||||| || || || || ||||||||||||||||| ||||||| || ||||||||| || Sbjct 132387 GAGACCGGAACTCCTTACATGCTTTACAAAGACGCTTGTAACCGCAAAAGTAATCAACAG 132328 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || || | ||| | |||||||||||| | |||| ||| Sbjct 132327 AATGTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATACGTCGGCT 132268 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT--GGATCCAG 112482 || || | || || || || || |||||||| || | | ||||| | | | Sbjct 132267 GAAGAAATAGCAGTTTGCAATCTGGCATCAATTGCGTT----GAATATGTTCGTAACGGC 132212 Query 112483 AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACC 112542 ||| ||| | || ||||| | | |||||| | |||||| | || | | |||| |||| Sbjct 132211 AGATAAACA-ATATGATTTTCACAAACTCAAAGAAGTTGCAAAGCTTATAACAAGGAACC 132153 Query 112543 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | |||| | | || ||| |||| || || | | || | ||||||||| | Sbjct 132152 TCAACAAAATAATCGATGTCAATTACTATCCGCTGCCGGAAGCCAGAAAATCTAATTTAC 132093 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662 | || |||||||| ||| | || |||||||| | || || | | | ||| | Sbjct 132092 GTCATCGTCCAATCGGTATAGGCGTCCAAGGATTTGCTGACGCACTAATTTT-------A 132040 Query 112663 ACGCATTTGATTCCGACG-AAGCGAA------GG------AAATCAATGCGCGTATATTT 112709 | || || || || ||| ||||||| || |||| || | || ||| Sbjct 132039 ATGCGTT--ATCCCTACGAAAGCGAAAATGCTGGCCGCTTAAATAAA----CAAATTTTT 131986 Query 112710 GAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCA 112769 || ||||| ||| ||| || | || || |||| | ||||| | | ||||| Sbjct 131985 GAAACAATATATTACGGTGCCTTAGAAGCCAGTTGTCAATTGGCCAAACAATACGGTCCG 131926 Query 112770 TATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAA 112829 || ||||| | ||| ||| ||||| | |||| | ||||||| |||||||||||| Sbjct 131925 TACGAAACATATGAAGGTAGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGA- 131867 Query 112830 GGTGAGAC-CAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAG 112886 | | || | || ||| | | ||| |||||| || || ||| || | | Sbjct 131866 --TAAAACGCCTACTGATCTATGGAATTGGTCCGCTCTTAAAGACGACATTAAAAATTAT 131809 Query 112887 GGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 112944 || | || | | ||||| || | || |||||||| || || || || || ||||| Sbjct 131808 GGAGTGCGCA--ATTCTTTGCTGGTAGCTCCAATGCCTACCGCGTCTACTGCTCAAATTC 131751 Query 112945 TGGGTAATAATGAATGCTTTGAACCCTACAC 112975 | ||||| || || | ||||| || ||||| Sbjct 131750 TTGGTAACAACGAGTCTTTTGAGCCATACAC 131720 >seq54 Length=1154455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 251/380 (66%), Gaps = 18/380 (5%) Strand=Plus/Minus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| || ||||| ||||| || | ||| || || ||| | || ||| || || Sbjct 77017 ATCTGTCGGTCAAAACGACCAGGTCTAAGCAGTGCTGGATCTAAGACATCCGGACGGTTA 76958 Query 15939 GTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAA 15995 || || || || | | | |||| || ||| ||||| ||||||||||| || Sbjct 76957 GTCGCAGCAATTATTATTACACCT---TCATTAGACTCAAAGCCATCCATCTCAACTAAT 76901 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG---CGT 16052 | ||| || | |||||||| | ||||||||| || | | |||| | || || || Sbjct 76900 AACTGATTTAATGTTTGTTCTCTTTCATCATT-GCCGCC--ACCAAGACCAATGCCACGA 76844 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC- 16111 || | ||||| ||||| || ||||| || || | || || || ||||| | || Sbjct 76843 TGTCTACCCACCGCATCTATTTCATCTATAAAAATTATACAAGGAGCATTTT-TCTTGCC 76785 Query 16112 --GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 16169 || ||||| | ||| || ||||| | || || ||||| |||||||| || ||||| Sbjct 76784 TTGA--TCAAACATATCACGAACACGACTTGCACCAACACCCACAAACATTTCAACAAAA 76727 Query 16170 TTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 16229 | | | ||| | ||| || ||||||| ||| || ||||| || || || || Sbjct 76726 TCAGATCCAGAAATACTAAAGAATGGCACATTAGCTTCTCCTGCAATTGCACGAGCAAGT 76667 Query 16230 AGAGTCTTACCCGTACCTGG 16249 | ||| ||||| || || || Sbjct 76666 AAAGTTTTACCAGTTCCAGG 76647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620725290787600