Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq365 122 1e-22 >seq365 Length=266026 Score = 122 bits (134), Expect = 1e-22 Identities = 346/517 (67%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| |||||||| | |||| ||||| || ||||| || | || | || || || Sbjct 117384 TGTGAAATCACAGGTTATGATAAAATATCGTTTCAACCCAATTCTGGTGCTCAAGGCGAA 117443 Query 159331 TATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATCAGGA-GATGATAAAAGAA 159388 ||||| || || ||| || | ||| |||||| | | | | | || | | ||| Sbjct 117444 TATGCGGGCCTACGAGCTATACGCAGC-TACCATGA-GCACCGTAAAGAAGGACACCGAA 117501 Query 159389 ATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAG 159448 |||| ||||| || || || || ||||| || |||||||| || || ||||| | Sbjct 117502 ATGTTTGTTTAATTCCCATTTCTGCGCATGGTACGAATCCTGCTTCTGCTCAAATGGCCG 117561 Query 159449 GGATGAAAGTTGTAGGTGTCAAGTGTGATGA-TGATGGCAACATAGACATCAAAGATCTA 159507 | |||||||||| | | | | || | | |||||| | ||||||||| | |||| Sbjct 117562 GCATGAAAGTTGAACCTAT-ACGTATACTTTCTGATGGAAGCATAGACATGGCACATCTG 117620 Query 159508 GAGAAGAAAGCAATCATGAATA--CATTTGAACTGTCATGTATTATGATTACATATCCAT 159565 | |||||| || |||| | || | | || || ||| | ||| |||||||||| | Sbjct 117621 CGCGATAAAGCA-TC-TGAACATGCAAGTAATCTTTCCTGTGTCATGGTTACATATCCCT 117678 Query 159566 CTACACATGGTGTATTTGAA---ACAAACATCAGACAGATATGTAAGATTGTTCATGAGA 159622 | || || || || ||| |||| | |||||| | || | || | ||| Sbjct 117679 CAACTATGGGAGTTTTCGAAGAGACAATTA-CAGACA--TTTGCGACCTTATACATCGCC 117735 Query 159623 ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC 159682 |||| || || || ||||| ||||| || ||| | || ||||| || ||| || | Sbjct 117736 ATGGAGGACAAGTGTATCTGGATGGCGCCAATATGAACGCACAAGTGGGTTTATGCCGTC 117795 Query 159683 CATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 | | || ||||| ||||| | |||| |||| || ||||||||||| || ||||| | Sbjct 117796 CTGGAGATTATGGAAGTGATGTTTCTCATTTAAATTTGCATAAGACATTTTGCATTCCTC 117855 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | || ||||| || || ||| | || |||||||| || Sbjct 117856 ACGGCGGTGGCGGACCGGGCATGGGACCTATTGGAGT 117892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588034991838800