Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq19 147 5e-30 seq15 134 3e-26 seq192 132 1e-25 >seq19 Length=2240402 Score = 147 bits (162), Expect = 5e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||||||||||| |||| || | || ||||| | |||||||| Sbjct 933780 GTCGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGTCCGTCTTCCAATTGCTTACC 933722 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | || || || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 933721 GGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATTTTAGCCTT 933662 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||||||||| ||| || ||||| ||||| | ||||| || ||||| || Sbjct 933661 GACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGT 933602 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | |||||| Sbjct 933601 TTTGACAAAAATTTGCAT 933584 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || ||||| |||||||||| |||| || | || ||||| | ||||| || Sbjct 933552 GTCGACTCCTTCTGAATGTTGTAATCGGACAAG-GTGCGTCCGTCTTCCAATTGCTTGCC 933494 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||| || ||||| ||||| ||||| ||||||||||| || ||| Sbjct 933493 AGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTT 933434 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| ||||| ||| || ||||| | ||| | ||||| || ||||| || Sbjct 933433 GACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGT 933374 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | |||||| Sbjct 933373 TTTGACAAAAATTTGCAT 933356 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| ||||| || || ||||| || ||||| || | | || | Sbjct 941642 GAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCG 941583 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||| | ||| || || || ||||| | || || |||||||||||||| ||||| Sbjct 941582 CCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTC 941523 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| |||||| || ||||| || || || ||||| |||||| || | || Sbjct 941522 CTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGT 941463 Query 195102 AACCGTCTTTCCTGTCAAAGTTTT 195125 | ||| ||||| ||||||||||| Sbjct 941462 GATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 194948 ACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGA 195007 |||| || ||||| |||||||||| | ||| | || ||||| | ||||| || || | Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067 | || | ||||| || ||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGT 932050 Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTA 195127 | ||||| ||||| ||| || ||||| | ||| | ||||| || ||||| ||||| | Sbjct 932049 TTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGA 931990 Query 195128 CGAACACTTGCAT 195140 | || | |||||| Sbjct 931989 CAAAAATTTGCAT 931977 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || ||||| || ||||| || | | || | ||||||||| | ||| || || || ||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | || || |||||||||||||| ||||| |||||||| |||||| || ||||| Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || || || ||||| |||||| || | || | ||| ||||| ||||||||||| || Sbjct 939732 TCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACA 939673 Query 195130 AACACTTGCATT 195141 || | ||||||| Sbjct 939672 AATATTTGCATT 939661 Score = 116 bits (128), Expect = 8e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | || || || || ||||| ||||| ||||| |||| || || | |||| | Sbjct 939645 AAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTT 939586 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||| || || || ||||| | |||||||| ||||| || | |||||||| ||| Sbjct 939585 TCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCT 939526 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || |||||||| || || || || || || | ||| | || Sbjct 939525 TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTT 939466 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| || ||||||| Sbjct 939465 TTCCCAGTCAATGTCTTCACGAAGACCTGCATTT 939432 Score = 111 bits (122), Expect = 3e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || ||||| |||||||||| |||| || | || ||||| | ||||| || Sbjct 931945 GTCGACTCCTTCTGAATGTTGTAATCGGACAAG-GTGCGTCCGTCTTCCAATTGCTTGCC 931887 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||| || ||||| ||||| ||||| || ||||||||||| || Sbjct 931886 AGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCTTT 931827 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || ||||| ||| ||||| | |||| || || || || || || Sbjct 931826 AACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGT 931767 Query 195123 TTTTACGAACACTTGCATTT 195142 ||| || || | |||||||| Sbjct 931766 TTTCACAAAGATTTGCATTT 931747 >seq15 Length=3179940 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| || || || |||| | || | |||||||| | || || || Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| |||||||||||||||||||| || |||||||| |||| Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| ||| || ||||| | |||| || || || || | |||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 195124 TTTACGAACACTTGCATTT 195142 || ||||| | |||||||| Sbjct 2518879 TTAACGAAAATTTGCATTT 2518861 >seq192 Length=539225 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || | ||||| |||||||||||||| ||||||| | || | ||||| Sbjct 278414 CAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATC 278355 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || ||||| || | |||||| ||||| || ||||| || |||||||| Sbjct 278354 TTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 278295 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || || || || || || |||||||| ||| || ||||| || | || Sbjct 278294 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 278235 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | |||||||| || | ||||| Sbjct 278234 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109450255411235