Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq145 398 9e-106 seq234 336 2e-87 seq689 84.2 2e-11 >seq145 Length=640502 Score = 398 bits (440), Expect = 9e-106 Identities = 1217/1885 (65%), Gaps = 38/1885 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || ||||||| || ||||| |||| || |||| || |||||||||||| Sbjct 131320 TTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACC 131379 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || ||||| || ||||| ||||| ||||| ||| || ||||||| ||||||||| Sbjct 131380 GGTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGG 131439 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | || ||||||| |||||||| || || ||||| || || | |||| | || Sbjct 131440 TTCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGC 131499 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | | | | | || ||||| || |||||||| | || ||| | Sbjct 131500 CATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTT----TA 131555 Query 47213 TTCTGGGAG-------ATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttt 47265 | |||| || || | | ||||| || || || | | | | | ||| ||||| Sbjct 131556 TACTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTT 131615 Query 47266 ttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAA 47325 | | | || |||||| |||||| || ||| | | |||| |||| || | Sbjct 131616 TCATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTA 131675 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||| || ||||| ||||| | || | || ||||| || ||||| || | || Sbjct 131676 CGATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAG 131735 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 | || || || |||| |||||||||||| || || |||||||| | || || | || Sbjct 131736 ACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAG 131795 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 ||| | |||||||| |||| || | ||||| ||| ||||| | Sbjct 131796 AATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAG 131855 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 || || ||| | |||||||||||| || |||||||| | ||| ||| | || Sbjct 131856 TAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCAT 131915 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 |||||| || ||||||||| |||| || | || |||||| ||||| || |||| |||| Sbjct 131916 ATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAAT 131975 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANN 47685 ||||||||||||| |||| | | |||| | || | | ||| | ||||| Sbjct 131976 ATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAAC 132035 Query 47686 NNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTT 47745 | || || || |||||||| || || ||||| ||||| | |||| | Sbjct 132036 GCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTA 132095 Query 47746 TATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGAN 47805 |||||| ||||| || | ||||| | || | ||| || ||||| || || Sbjct 132096 AATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 47806 NNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT---A 47862 ||| |||| | | ||| | ||||||| | | |||| | Sbjct 132156 TCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCCG 132215 Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 | || ||| |||| | || || ||||| ||||| || || |||| || | | | Sbjct 132216 TTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACG 132275 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 |||||| | ||||| | ||| | |||| ||||| ||||| || | ||| || |||| Sbjct 132276 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 132335 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 || | |||||| ||||| ||||||||||| |||| ||||| || || | || | Sbjct 132336 TACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGGG 132395 Query 48043 ATTCAATGATAGATTTCCAAAC---AGTC-CTAGCCTTTATAACAGCTCTAGCTTTATTA 48098 | || | ||| | || | |||| | ||| | ||| | |||||| Sbjct 132396 ---CGCTG-CATATTGCGAACCACAAGTCACGAGCTTGTATTGTTTTGTTCGCTTTACCC 132451 Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 || | ||| ||||| | || || || ||||||| || ||||| || | || || ||| Sbjct 132452 TCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGCCA 132511 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 || |||| || || ||||| | ||||||| ||||||| | ||||| |||| || Sbjct 132512 GGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGAAC 132571 Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 | ||| |||||||| ||||| |||||| |||| | | || || || || || Sbjct 132572 AGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCGTA 132631 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || |||| | | ||||| || | ||||| || ||||| || ||||| ||||| || Sbjct 132632 TTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCA 132691 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT--ATAAA 48396 | | || || ||||| ||| ||||| || | ||| | |||| |||||| | ||| Sbjct 132692 AAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAAA 132751 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 | | ||||| || |||| ||| | || | | | | | || || | | | | || Sbjct 132752 CGC--AACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809 Query 48457 TAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | |||| ||| || | || || | |||||| ||||| ||| ||||| ||| || Sbjct 132810 TTGCTCGTATGCAATGAATATTT---AGACCTATTCCACCGGCCGACTTAGAAATTTTAG 132866 Query 48514 CACA-CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGA 48572 |||| || || | |||| ||| || || | || ||| |||| ||| | Sbjct 132867 CACATTGGTCTACAGCCTTCAT-AATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAG 132925 Query 48573 AAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || || |||| ||| || | || | | | |||||| ||||| || |||||| Sbjct 132926 AAGCAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGA 132985 Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTG- 48691 |||| | | | || | | ||||| ||||||||| | | || || | ||| | Sbjct 132986 GTAAAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGC 133043 Query 48692 -ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 || || || |||| |||||||||||||||| ||| |||| || |||||||| || Sbjct 133044 CGTGAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCAT 133103 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGT 48810 | || || || | || || ||| || |||||||| |||||| | || || ||| | Sbjct 133104 TAATCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAAT 133163 Query 48811 CGTTATCATTAATAATTGATGAATT 48835 || ||||| |||||| | ||||| Sbjct 133164 CGCGATCATAAATAATAGCAGAATT 133188 >seq234 Length=462357 Score = 336 bits (372), Expect = 2e-87 Identities = 508/720 (71%), Gaps = 2/720 (0%) Strand=Plus/Minus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 || ||||||||||| | | ||| || ||| ||| |||||| || ||| | || | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || ||||| | || |||| || ||||| | ||| |||| ||| || || || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || |||| ||| || | || | |||| | | || | || | |||||||||| Sbjct 280830 GCATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAAC 280771 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 || || ||||| ||||| || | || || || | ||||| ||||||||| ||| Sbjct 280770 ATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 280711 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 |||||||| ||||| | ||| | ||| |||| ||| ||||| ||||| || ||| | Sbjct 280710 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTA 280651 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 |||||||||||||| || || || ||||| | || | || ||| || |||| || Sbjct 280650 AAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGC 280591 Query 19135 TTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTAT 19193 |||| ||||| || ||||| || |||||||| || || ||||||||||||| || Sbjct 280590 G-ATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAAT 280532 Query 19194 AGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 | |||||||||||| ||| || | | ||| | | ||||| || || | |||||| Sbjct 280531 GGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAACT 280472 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||||| || || | |||||| || || || ||||| || ||||| || | ||||| Sbjct 280471 ATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTC 280412 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 ||||| || || || |||||| ||| || ||||| |||||||| || ||||| Sbjct 280411 GGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGA 280352 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 || |||||||| || || |||||| ||||||||| ||| | | |||| ||| Sbjct 280351 TGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGATT 280292 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 |||||| | || |||||||| | ||| || || ||| | ||||||||||| || || || Sbjct 280291 CCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCCGC 280232 >seq689 Length=69493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 18948 TTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATT 19007 ||||||||| || || || ||||| || | || || || | ||||| |||||| Sbjct 34921 TTTAAACATTAATACCGCTAATTCACAGTGCAAGCCTTCATCGCGGGATATCATTTCATT 34862 Query 19008 AGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGA 19067 ||| |||||||||| ||||| | | | | ||| |||| || ||||| ||||| || Sbjct 34861 AGAGAATGTTAAACTCGGCATTATTTCACGTTTCTTTACTCAAAATATCGAAGCGAAGCT 34802 Query 19068 TCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGC 19103 ||| ||||||||||||||| | || || ||||| Sbjct 34801 GCCACTAAAGAATATACCTTCGGCGGCAGCGAAAGC 34766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093306876200