Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq192 172 4e-38 seq19 150 1e-31 seq15 134 1e-26 seq884 96.9 3e-15 seq264 96.9 3e-15 >seq192 Length=539225 Score = 172 bits (190), Expect = 4e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| |||| ||||| || || | ||| | ||| ||||||||||| ||||| ||||||| Sbjct 278429 TCCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 278370 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | |||| ||||||||||| || || || ||||| || || || ||||| || Sbjct 278369 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGG 278310 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || ||||| || ||||| || ||||||| |||| | |||||| || | ||| || Sbjct 278309 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 278250 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 278249 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq19 Length=2240402 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| || ||||| | || || || || || || |||||||||| | || | | Sbjct 931964 ACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCC 931905 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 931904 GTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTT 931845 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| ||| ||| |||| | ||| || || | ||| ||||| | ||| | Sbjct 931844 ATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAAT 931785 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| ||||| ||||| ||||| || ||||| Sbjct 931784 AGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || || || |||||||| |||||||| ||||| || | Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGAC 941591 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || ||||| ||||||||||| || || || ||| Sbjct 941590 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 941531 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| |||||| ||| || |||| | ||| || || | |||||| Sbjct 941530 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACC 941471 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT 101454 || | ||||| |||||| ||||| |||||||| Sbjct 941470 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 141 bits (156), Expect = 7e-29 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || |||||||| ||||| || | | || | |||| ||||| || || || ||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 ||||||||||| || || || ||||| ||||| || ||||| |||||| ||| || || Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||| || || | |||||| || | ||||| |||||| ||||| |||||||| ||| Sbjct 939732 TCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACA 939673 Query 101459 AATATCTGCAT 101469 ||||| ||||| Sbjct 939672 AATATTTGCAT 939662 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| || ||||| | || || || || || ||||||||||||| | || | | Sbjct 933799 ACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCC 933740 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||||||||| ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 933739 GTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 933680 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || |||||||| || || |||| | ||||| || | || ||||| || |||| Sbjct 933679 GTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGAT 933620 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || ||||| ||||| || ||||| Sbjct 933619 GGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||||||||| ||||| || || |||||||| || || ||||| |||| Sbjct 939662 TTCCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGG 939603 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | | ||| || || || || || ||||| |||||||| |||||||| || | Sbjct 939602 AGAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 939543 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | | |||||||||||||||||||| ||| ||| | || | ||| || || | || | Sbjct 939542 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 939483 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | |||| ||||| || || || || || || || | |||||| Sbjct 939482 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCAT 939434 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| || ||||| | || || || || || || |||||||||| | || | | Sbjct 933571 ACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCC 933512 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 933511 GTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTT 933452 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| || || || |||| | |||||| || | || ||||| | |||| Sbjct 933451 GTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGAT 933392 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || ||||| ||||| || ||||| Sbjct 933391 GGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || || || || |||||||||| | ||| | | || ||||||||||| || ||||| Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 |||||||| || ||||| || ||||| ||||| || |||||||| || || || || Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | |||||| || | || ||||| | |||| || ||||| || || ||||| ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 101459 AATATCTGCAT 101469 || || ||||| Sbjct 931987 AAAATTTGCAT 931977 >seq15 Length=3179940 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || |||||||| || || |||| | || | |||| |||||||| || || Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||||||| |||||||| || ||||||||||||||||| |||||||| || Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | |||||| || | || ||||| | ||| | |||||||| || | |||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 101453 TTTACAAATATCTGCAT 101469 || || || || ||||| Sbjct 2518879 TTAACGAAAATTTGCAT 2518863 >seq884 Length=18444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 13756 ACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGC 13815 |||| ||||||| |||||||| |||||||||||||||| | || || ||| || || Sbjct 4332 ACCGACATAACCATTGGGATCCGTTCCATCCAAACTGTATCTATCATTTAAAAGTA--GC 4275 Query 13816 GTTGATT--AAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATAT 13873 | ||| ||||| || ||| ||||||||||||| || |||||||||||||| Sbjct 4274 GAAAATTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATAC 4215 Query 13874 ATTCTCATATATCCGTGCATTTTGCC 13899 || | || | | ||||||||||| || Sbjct 4214 ATACGCAAAAAACCGTGCATTTTACC 4189 >seq264 Length=376872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || ||||| || ||| |||| ||||| |||| || || | | || | | | Sbjct 176039 CGTAATACCAAATGGAGCGTAAATTCCTTTTGGGTATTATAGTCTGACAAGGTGCGGCTA 175980 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| | |||||| |||| || || ||||||||||| || ||||| |||| Sbjct 175979 TCTTCCAGATACTTACCGACAAAAATGAAGCGCTGTTGATCTGGAGGAAT---ATCTTCG 175923 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||||||| ||| | |||| | | | || || ||| ||||| | ||||| Sbjct 175922 TCGTGAATTTTTGCTTTACCGTTTTCAAGAATATCCGAGTGTTCTACTTCTAAAGTGATG 175863 Query 101435 GTTTTGCCGGTT---AAAGTTTTTACAAATATCTGCATG 101470 |||| | ||| |||||||||||||| ||||| ||| Sbjct 175862 GTTT---CAGTTGCCAAAGTTTTTACAAAGATCTGAATG 175827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267750637185