Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq192 118 8e-22 seq19 100 2e-16 seq226 87.8 1e-12 >seq192 Length=539225 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||| | ||||| ||| |||||||||||||| ||||| || | | ||| | Sbjct 278416 CGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCA 278357 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| ||||| || |||| ||| || || || | |||| ||||| ||| Sbjct 278356 TCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTG 278297 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||||||| | | || || || | || ||||| | || || Sbjct 278296 TCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 278237 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | |||||||||||||||||||| Sbjct 278236 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq19 Length=2240402 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || ||||| ||||| | | || | || |||||||| || || ||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||| || || | |||| || |||||||| || |||||||||| | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGTTTTAACGTT 939734 Query 48696 CCC-ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | |||||||||| || ||||||||||| ||||||||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| || |||||||||||||| || | | || |||| ||| Sbjct 933792 ACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 933733 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||||||||| |||| ||||| ||||| | ||||| || |||||||| | Sbjct 933732 AATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 933673 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || || | | | || || | ||| || || | || || || || Sbjct 933672 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTG 933613 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| |||||||| ||||| Sbjct 933612 CCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || ||||| || ||||| ||||| | | || Sbjct 941641 AGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGC 941582 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| |||| ||||| || || | |||| || ||| Sbjct 941581 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 941522 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || || || | |||||||||| || Sbjct 941521 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTG 941462 Query 48729 ATCGTTTTTCCCGTCAAAGTTTT 48751 ||||||||||| ||||||||||| Sbjct 941461 ATCGTTTTTCCGGTCAAAGTTTT 941439 >seq226 Length=441417 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| || || | || ||||| ||||| ||||| | ||| || || | |||| Sbjct 116417 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCACCACGCTTAATATCAAAA 116358 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || |||||||||||||| || | || |||| || || | ||| || ||||| ||| Sbjct 116357 TCAACATCGGAATGATTGAAAAGAAGAACACCCAAATTGCCTCGGTAGTCTTCATCAATC 116298 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 |||||||| ||||| |||||||| | ||| || | || || || || || | ||| Sbjct 116297 ACACCAGCTCCCACATCGATGAAATTCTTCCAAGCCAAGCCGGATCGTGGTGCTACGCGA 116238 Query 9247 CCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGT 9284 ||||| | || |||| ||| | |||| ||||| Sbjct 116237 CCGTAAGAGCCACTTGGTACTTGTATTTGCAAATCGGT 116200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927362897215