Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_020483.1 Length=42084 Score E Sequences producing significant alignments: (Bits) Value seq54 107 5e-19 >seq54 Length=1154455 Score = 107 bits (118), Expect = 5e-19 Identities = 295/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 15437 CACACCTGTTAGCCATAGCACCTAACGCATC-ATCATCTATTATTTGTGGTACGACATCA 15495 ||||| | | || || || |||| || || ||| || |||||| |||| || || Sbjct 86185 CACACAAGCTCGCTATTGCTCCTACTGCCTCGATC-TCCATTATTGCAGGTAATACCTCT 86127 Query 15496 CCATCAATAGAACCATACAGAGCTAACGCTTATGTACAAAAAACAATGTCAGGTTCTTTT 15555 || |||||||||||| ||| |||| | ||||||| ||| | |||| || ||| Sbjct 86126 CCTGGAATAGAACCATATGCAGCAAACGTATTCATACAAAAGACACTTACAGGCTCATTT 86067 Query 15556 CTAGTTAAGAATAAATATTTAGAAAAGTTACTAG-AGAAAAAAGGCATGAACACTGACGC 15614 |||| ||||||| || |||| || ||| |||||||| || || || ||| Sbjct 86066 GTAGTGCGAAATAAATTCTTGCAAAAACTATTAGCAGAAAAAAATCAAGA-CAATGATAA 86008 Query 15615 AGTGTGGCAATCTATTGTAGCACA-GAGAGGTTCTGTATTACATTTAGATGAACTATCTG 15673 | | ||| || ||| | || | ||| ||||| || ||||||||| || || Sbjct 86007 AATATGGTCTTCAATTTCAACAAACGAG-GGTTCCGTTCAGCATTTAGATTTTCTTAGTG 85949 Query 15674 ATTATGAAAAAGATACATTTAAAACATCTATAGAAATTAATCAGCAATGGATAATAGAAC 15733 | |||||||| |||||||||||| | || || |||| |||||| ||||||| Sbjct 85948 AGCATGAAAAATTGACATTTAAAACAGCGTACGAGCTTGATCAAAGATGGATTATAGAAC 85889 Query 15734 ATGCGGCAGACAGACAACAATTTATATGTCAAGGTCAGTCAGTAAATGTATTTGTACCTG 15793 |||| || ||| | ||| ||||| ||| ||||||||| | || |||||| Sbjct 85888 ATGCAAGCGATAGAACTTCGTATATTTGTCAGTCTCAATCAGTAAATCTGTTCTTACCTG 85829 Query 15794 CTGATGTAAACATTAAAG--AGTTACATGACATACACATGTTAGCTTGGAAAAGAAAAAT 15851 | | || |||| || | | || || | ||||||||| | |||||||||| | | | Sbjct 85828 CCAACGT--ACATAAACGTTACTTGCACAAAATACACATGCTTGCTTGGAAAAAAGGATT 85771 Query 15852 TAAAACTTTGTATTATTGTAGA 15873 || | || ||||| || ||| Sbjct 85770 GAAGAGCTTATATTACTGCAGA 85749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134543676965660