Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq54 105 8e-18 seq5 87.8 2e-12 >seq54 Length=1154455 Score = 105 bits (116), Expect = 8e-18 Identities = 253/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || || || | || || || || || || || ||| | ||||| |||||| Sbjct 76647 CCTGGAACTGGTAAAACTTTACTTGCTCGTGCAATTGCAGGAGAAGCTAATGTGCCATTC 76706 Query 175375 ATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | ||| | ||| | | ||||| || |||||||| ||||| ||||| | | || Sbjct 76707 TTT-AGTATTTCTGGATCTGATTTTGTTGAAATGTTTGTGGGTGTTGGTGCAAGTCGTGT 76765 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | ||||| | | ||||| || ||||| | || || ||||| || Sbjct 76766 TCGTGATATGTTTGATCAAGGCAAGAAAAATGCTCCTTGTATAATTTTTATAGATGAAAT 76825 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA-TGCCAGCAAATGACGAGAGAGAAC 175552 ||||||||||| | || || || |||| | || | |||| ||| || ||||||| Sbjct 76826 AGATGCGGTGGGTAGACATCGTGGCATTGGTCTTGGTGGCGGCAA-TGATGAAAGAGAAC 76884 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTG 175609 ||||| | ||||| || | ||||||||||||||||| ||||| || | Sbjct 76885 AAACATTAAATCAGTTATTAGTTGAGATGGATGGCTTTGAGTCTAATGA---AGGTGTAA 76941 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | | ||||| || ||||| || |||| || | ||| || || ||| | || |||| Sbjct 76942 TAATAATTGCTGCGACTAACCGTCCGGATGTCTTAGATCCAGCACTGCTTAGACCTGGTC 77001 Query 175670 GTTTTGATCGCAAGAT 175685 ||||||| || |||| Sbjct 77002 GTTTTGACCGACAGAT 77017 >seq5 Length=4157372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| ||| |||||| | | | ||| |||||||| || || ||||| Sbjct 2099215 GGTGCAAAGATACCCAAAGGCGCAATGTTAACTGGTCCCCCAGGTACTGGCAAAACCCTA 2099274 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || || || | || || ||| | ||||| ||||||||| | || ||||| | | Sbjct 2099275 CTTGCAAAGGCGACTGCAGGAGAAGCTAATGTGCCATTCATC-ACTGTCTCTGGTTCCGA 2099333 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || | || ||||||||||| |||||| | || || || ||| | |||| | || Sbjct 2099334 ATTCTTAGAAATGTTTGTTGGCGTGGGTCCATCGAGAGTGCGTGATATGTTTGCTTTGGC 2099393 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGC 175506 ||| ||||| || || ||| |||| |||||||| || || ||||| ||| Sbjct 2099394 CCGTAAAAATGCTCCTTGCATTCTCTTTATTGATGAAATAGACGCGGTAGGC 2099445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553157050400