Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq15 181 2e-40 seq19 154 3e-32 seq192 145 1e-29 seq69 84.2 4e-11 >seq15 Length=3179940 Score = 181 bits (200), Expect = 2e-40 Identities = 190/250 (76%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||| ||||| | | || ||||||| |||||||| | ||| || || |||||||| Sbjct 2519093 TATGCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTC 2519034 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 ||||||||| | ||| || |||||||| || || ||||| || | |||||||| || Sbjct 2519033 GGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 2518974 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || ||||||||||| || ||||||| || | |||| |||||| ||||||| ||| Sbjct 2518973 AGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTC 2518914 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 |||||| | ||| |||||||| || || || ||||| || || ||||||||||| || | Sbjct 2518913 AACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 2518854 Query 193370 AAAATAATTA 193379 || ||||| Sbjct 2518853 CTAAAAATTA 2518844 >seq19 Length=2240402 Score = 154 bits (170), Expect = 3e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || |||| ||||||||| | ||| || ||| || Sbjct 931985 AATTTGCATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTT 931926 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || || | || || ||||| || || |||||||| || | || || Sbjct 931925 GTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTG 931866 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| |||||||| ||||| | ||| | |||| |||||||| || Sbjct 931865 ATCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGA 931806 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||| | ||| |||||||| || |||| ||||| ||||| ||||||||||| Sbjct 931805 TGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTT 931746 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| |||||||| | || || || |||| ||||||||| | ||| || |||||| Sbjct 933819 ATTTAAATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTG 933760 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | || || ||||| || ||||||||||| || | ||| ||| Sbjct 933759 TAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGA 933700 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || || ||||| | || | ||| ||| || |||||| Sbjct 933699 TCTGGGGGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAA 933640 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| |||||||| || || || || || || | ||||| ||||| |||||||| Sbjct 933639 GGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| | || | ||||| ||| || |||||||| | || | || ||| Sbjct 939642 ACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCT 939583 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || ||||| || ||||| || || | |||||||| || || | ||||||||||||||| Sbjct 939582 AACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGA 939523 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| ||||| | ||| |||||||||||| | |||||| || | || |||||||| Sbjct 939522 ATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTC 939463 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || | || || || || | ||||||||| Sbjct 939462 CCAGTCAATGTCTTCACGAAGACCTGCATTTTA 939430 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || || | ||| || || ||||| || ||||| || || | | Sbjct 939843 ATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGC 939784 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || ||||| || ||||| ||||| ||||| | ||| |||||| Sbjct 939783 TGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTTTCGATAGTA 939724 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || || || || | ||| || ||||| || || | ||||| |||||||||||| Sbjct 939723 TCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACAAATATTTGC 939664 Query 193359 ATT 193361 ||| Sbjct 939663 ATT 939661 >seq192 Length=539225 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| ||| || | || ||||| || || | ||||| ||||||||| ||||| Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || ||||| |||||||| ||||| |||| || || || || || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||| || || || |||| ||||| |||| ||||| || || | || || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 >seq69 Length=1091995 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGT--AGCCTCTTTAGAAATA 193181 ||||| |||||||| ||| || | | || ||| | || |||| |||| | | | Sbjct 837508 AATTTCCATACCACCAAGCAAACGTAAAATCATATGGATAGTCGAGCC-CTTTTGTA-TG 837451 Query 193182 TTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGT 193241 ||||||| |||||| | | ||| |||| || || |||||| |||| |||| || Sbjct 837450 TTATAGTGCATTAACGTGCAACCATCTTCTAGCTGCTTGCCGGCATAAATCAATCGGCGT 837391 Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 |||| || || || || || ||||| || || | | ||| || || |||||||||| Sbjct 837390 TGATTTGGTGGGATGCCGTCCTTATCCTGAATCTCCGCTTTAATCTTCTCAATAGTATCG 837331 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | | || | |||| ||| | || || || |||| |||||| || || || |||||| Sbjct 837330 GTCGGTTCGGCATCTAAAGTGAGGGTATTGCCCGTTAACGTTTTCACGAAAATCTGCATT 837271 Query 193362 TT 193363 || Sbjct 837270 TT 837269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899629603275600