Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq234 224 1e-53 seq19 131 2e-25 seq15 127 3e-24 seq689 89.7 8e-13 >seq234 Length=462357 Score = 224 bits (248), Expect = 1e-53 Identities = 489/726 (67%), Gaps = 13/726 (2%) Strand=Plus/Minus Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031 ||||| ||| || | ||| || ||| |||| | ||||| |||| |||| ||| Sbjct 280947 AATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTTC 280888 Query 18032 ATACCTAGTA-GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGA 18090 || || | || ||| || |||| || || | | ||| ||||| || || | ||| | Sbjct 280887 ATGCCAATTAAGTC-GACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGC 280829 Query 18091 CTCTTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATA 18150 ||| ||||||| | | | || ||| | ||| | || | || ||| | Sbjct 280828 ATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAACAT 280769 Query 18151 TAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAA 18210 ||||| |||||| ||| ||| || |||||||| | ||||| | ||| ||| || Sbjct 280768 TAATAC---CGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAA 280712 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGA 18270 ||||| || |||||||| || | ||| ||||||||||||||||| ||||| || | | Sbjct 280711 TGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACT 280652 Query 18271 AAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 |||||||||||| || ||| ||||| ||||||| | ||| ||||| | || Sbjct 280651 AAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATG 280592 Query 18331 -GCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 | | | |||||| | | |||||||| | | | | || || |||| | Sbjct 280591 CGATGA-TATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 280533 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 | |||||||| | || || |||||| ||| | ||||| || ||||| | ||| Sbjct 280532 TGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAAC 280473 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 ||||||||| || || | ||||||| || || ||||||| |||||| | | ||| | Sbjct 280472 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 280413 Query 18510 CGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 ||| ||||| ||| |||||| ||| || |||||||||||||| ||||| || | Sbjct 280412 CGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 280353 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGA--GAT 18626 | || ||||| |||||||||| | ||| ||||| ||| || ||| | || Sbjct 280352 ATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAACCGA- 280294 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 ||||| || || || ||||| || |||||||| || || | ||||||||||| | || Sbjct 280293 --TTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTT 280236 Query 18687 CGGCCT 18692 | |||| Sbjct 280235 CCGCCT 280230 >seq19 Length=2240402 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| ||||| ||||||||||| || ||||| ||| Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 931805 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| |||||| |||||||| ||||| || || ||||| Sbjct 931806 TCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGAT 931865 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | ||||||| ||| || ||||| | ||||| | || || || ||||| Sbjct 931866 CAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTAC 931925 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || ||| |||| | ||||| || Sbjct 931926 AACATTCAGAAGGAGTCGACATTGCATTTGGT 931957 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| || || || || |||||||||| ||| Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || |||||| || || || ||||| || || ||||| || Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| |||||||||||| | ||||| | || || || ||||| ||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| | ||||| || Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGT 933792 Score = 116 bits (128), Expect = 5e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| | || | || ||||||||||| |||||||| || || || || || Sbjct 939430 TAAAATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 939489 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 || |||| |||| || || |||| |||||| |||||||||||||| | || ||||| Sbjct 939490 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGA 939549 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||| | ||||| | ||| || || ||| | ||| || | | || | || || || Sbjct 939550 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTCCGACTA 939609 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||||| ||||||| ||||| || ||| Sbjct 939610 CAACATTCAGAAAGAATCGACGCTCCATTTGGTTTTA 939646 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| || || || || ||||||||||| ||| Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||| || || || ||||| || ||||| || || ||||| || Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || ||||| | ||||| | ||||| || ||||| || Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 156003 AT 156004 || Sbjct 932157 AT 932158 Score = 113 bits (124), Expect = 7e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | ||||| ||||| |||||||| || || || || || ||| || Sbjct 939661 AATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATC 939720 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| |||| ||||| ||||| || ||||| || |||||||| || Sbjct 939721 GGATACTATCGAAAACGTTAAAACAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 939780 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | ||| || || ||| | |||||| Sbjct 939781 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGAT 939817 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| || || || || ||||||||||| ||| Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||| || || || ||||| || ||||| || || ||||| || Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || ||||| | ||||| | || || || ||||| || Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| | ||||| || Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGT 933564 >seq15 Length=3179940 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || ||||||| | ||||| ||||||||||| || ||||| || | Sbjct 2518860 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 2518919 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || ||||| || |||||||||||||| |||||||| Sbjct 2518920 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 2518979 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| || || || || | |||||| | || ||||| || ||| Sbjct 2518980 CAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTAT 2519039 Query 156000 AATATATCCAAAGAGGCGAC 156019 || ||| || ||| |||| Sbjct 2519040 AACATACAAAAGGAGTCGAC 2519059 >seq689 Length=69493 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 ||| || ||| ||| || |||||||| | |||||| | ||| ||| || ||||| | Sbjct 34906 CGCTAATTCACAGTGCAAGCCTTCATCGCGGGATATCATTTCATTAGAGAATGTTAAACT 34847 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 |||||||| | | ||| |||| ||||||||||| ||||| || | | ||||||||| Sbjct 34846 CGGCATTATTTCACGTTTCTTTACTCAAAATATCGAAGCGAAGCTGCCACTAAAGAATAT 34787 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCT-TTCAGCAAAA 18319 ||| || || ||||| ||| || || | |||| ||||| Sbjct 34786 ACCTTCGGCGGCAGCGAAAGCT-TTGATATGTTCACCAAAA 34747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731851827778000