Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq19 159 7e-34 seq234 145 2e-29 seq15 134 3e-26 seq192 131 3e-25 >seq19 Length=2240402 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||| || ||||| || || | ||| || || || ||||| Sbjct 931978 ATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCG 931919 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||||||| || |||||||| || || | || ||||| || Sbjct 931918 GACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGG 931859 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 931858 GGAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCA 931799 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||| ||||| |||||||||||||| | ||| || |||||||| Sbjct 931798 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTT 931746 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||| || ||||| | || | ||||| || || || || Sbjct 939663 ATTCCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCG 939604 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || ||| || || ||||| ||||||||||| || | |||||||| ||| Sbjct 939603 GAGAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 939544 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || | ||||||||||||||| |||||| |||| ||||| |||| ||| || | || Sbjct 939543 GGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCA 939484 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || | || || ||||| ||||| ||||| || | || | |||||||||| Sbjct 939483 ACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATTTTA 939430 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| ||||| || |||| ||||| ||||| ||||||||||| || | | Sbjct 939843 ATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGC 939784 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || ||||| || ||||| ||||| |||| || || |||| | Sbjct 939783 TGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTTTCGATAGTA 939724 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| || || | ||| || ||||| || || || ||||| | |||||| ||| Sbjct 939723 TCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACAAATATTTGC 939664 Query 192535 ATT 192537 ||| Sbjct 939663 ATT 939661 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | ||||| || || || || || ||||| ||||| || Sbjct 941641 AGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGC 941582 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| ||||| ||||| ||||||||||| || | ||| || || || || || ||||| Sbjct 941581 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 941522 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| ||||| ||| || || |||| ||| || ||||| || || | ||| Sbjct 941521 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTG 941462 Query 192499 ATGGTTTTACCAGTTAATGTTTT 192521 || ||||| || || || ||||| Sbjct 941461 ATCGTTTTTCCGGTCAAAGTTTT 941439 >seq234 Length=462357 Score = 145 bits (160), Expect = 2e-29 Identities = 424/648 (65%), Gaps = 27/648 (4%) Strand=Plus/Minus Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696 |||| | ||| || | |||||| ||| |||| | ||||| |||| ||| | || Sbjct 280948 CAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTT 280889 Query 49697 CATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacag 49755 ||| || | ||| | | |||||| || || |||| ||| |||||||| |||| || | Sbjct 280888 CATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAA-AAACTCTTTTTCAATTTTAACGG 280830 Query 49756 cttgtttaattat--cataattatattattttttgataatttatatttaatatgattcgc 49813 | | | | ||||| | || | || ||| | ||| ||| ||| | || Sbjct 280829 CATCTGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGT--TT--- 280775 Query 49814 atatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873 | | ||||| ||||| ||| || || || || || | ||||| | ||||||| Sbjct 280774 AAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGA 280715 Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933 || ||||| |||||||||| ||| | || || ||||||||||| || || || || | Sbjct 280714 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCC 280655 Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 49993 | |||||||||||| ||||| || || ||||||| | | ||||| |||| Sbjct 280654 ACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAA-ATTAGCCG 280596 Query 49994 A-TCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 | | | |||||||| || |||||| || || || || || | | || || | | Sbjct 280595 AATGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 280536 Query 50053 CTATAGCTTTAAATA---ATTCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 | || || ||||||| ||||| | |||||||| | Sbjct 280535 CAATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCG------A 280482 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 | | |||| ||||||||| || || ||| |||||| || |||||||| |||||| Sbjct 280481 TAAGTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGC 280422 Query 50167 GTCTTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224 | ||||| | ||||| || || ||| ||||||| |||||||||||| || Sbjct 280421 AACGAGCTTCGGTTATTTGAACCTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAAC 280364 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATG 50272 ||||||||| ||||| || || || || ||||| | | ||||||||| Sbjct 280363 AATACCATCGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATG 280316 >seq15 Length=3179940 Score = 134 bits (148), Expect = 3e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| || ||||| | ||||| | ||| || || || || | ||| || || ||||| Sbjct 2519096 AATTATGCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATA 2519037 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || ||||| || ||| |||| ||||||||||| ||||| || || || | |||||||| Sbjct 2519036 GTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 2518977 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || || ||||||||||| || ||||| || ||||| |||| || || | Sbjct 2518976 TGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGG 2518917 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | |||||| ||||| ||||| | ||||||| || || |||||||| Sbjct 2518916 CTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 2518860 >seq192 Length=539225 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| | ||| || || | |||||| || | ||||| ||||||||||| || Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||||||| || || || || || |||| || || || ||||| Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| ||||| || || || || ||||||||| |||| || || | ||| || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || |||| ||||| | ||| |||||||| || Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984452186901750