Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq135 138 3e-27 seq234 89.7 2e-12 >seq135 Length=742707 Score = 138 bits (152), Expect = 3e-27 Identities = 345/511 (68%), Gaps = 21/511 (4%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| ||||| ||||| | ||| | |||||| || || || | ||||| |||| ||| | Sbjct 144777 TAACGCTGGATCTAAAACATCTGGTCTGTTAGTAGCAGCAATTACAATAATACTTTCA-T 144835 Query 288933 TTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCAT 288991 || ||| ||| |||||||| | ||| |||||||| | ||||||||| | |||||| | Sbjct 144836 TTCCTTCAAAACCATCCATTTCTACTAACATTTGATTTAATGTTTGTTCTCGTTCATCGT 144895 Query 288992 TTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA--CCAACAGCATCAATTTCGTC 289049 || | | |||| || || ||| ||| || || ||||||||||| || Sbjct 144896 GCCCCCCGCCT-AATC---CG----GCACCTCTTTGACGTCCTACTGCATCAATTTCATC 144947 Query 289050 AATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGA 289109 ||| || || | ||| || | | ||| | |||| | |||| | |||||||| | || Sbjct 144948 AATAAATATAATACATGGTGCAGTTTTTTTCGCTTGTTCAAACATATCTCTTACTCTAGA 145007 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTAC 289169 || |||| || ||| |||||||||| || ||||| | || | || |||| ||| Sbjct 145008 AGCACCAACTCCTACAAACATTTCTACGAAATCAGATCCTGAAATCGTAAAAAATGGTAC 145067 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 || ||||| ||||| | || | || | |||||| || |||||||| ||||| || Sbjct 145068 CTTGGCTTCTCCTGCAATAGCTTTTGCTAAAAGTGTTTTTCCTGTTCCTGGTGGGCCAAT 145127 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATA--TTTCTCAGGGCTCT- 289285 | || | ||| || || | |||| | || ||| | | | ||| | || ||| Sbjct 145128 CATAAGTATTCCTTTAGGAATTTTTCCTCCTAGC-TTTTGAAACCTTTTT---GGTTCTC 145183 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 ||||| | ||||| | ||| | || | |||||| |||||||| || || ||||| Sbjct 145184 TTAAATAATCTACTAATTCGCTTACCTCTTCTTTTGCTTCATCACAACCAGCAACATCTA 145243 Query 289346 CAAAAGTAATATTAATATCGTTCTTGCGTAA 289376 ||| || | ||||| | | |||| |||| Sbjct 145244 GAAATGTTGTTTTAAT-TTGATCTTCTGTAA 145273 >seq234 Length=462357 Score = 89.7 bits (98), Expect = 2e-12 Identities = 301/461 (65%), Gaps = 16/461 (3%) Strand=Plus/Plus Query 133211 CATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA 133269 ||||||||||| ||| |||| || |||||||| || |||||||||||| ||| || Sbjct 280316 CATTTTATTTCACATG-TTTTGGCTTTTTTTGCGGCATCCGATGGTATTGTTAATGAGAA 280374 Query 133270 TTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCT 133329 ||||| ||| ||| ||| |||||| | ||||||| ||| ||||||||| | Sbjct 280375 TTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACCGAAGCTCGTTGCTTTTATGGTTT 280434 Query 133330 ACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACAT 133389 || ||||| ||||||||| | || || | ||| | || || || || || || Sbjct 280435 TCAAATTGCCATGGAAAATGTGCACTCGGAAATGTATAGTTTACTTATCGAAACATATAT 280494 Query 133390 CAAAGATACCGTCCAGAAGCAC-----AAACTATTCAACGCCATT-AGCGAATTTCCTTG 133443 || || | | ||| || | ||||| || |||||| || ||| | ||| Sbjct 280495 CATGGA-----TGAAAAAGAACGTGAATATCTATTTAATGCCATTGAGACAATGCCATTG 280549 Query 133444 TATTAAAAAGAAATCTGACTGGGCTATTAAATGGAT-CCAGGACAAGCGTGCGAGTTTTG 133502 |||| ||||| | || |||||| | ||||| || || || || | ||||| Sbjct 280550 -GTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGATATCATCGCATTCG-GCTAATTTTG 280607 Query 133503 CTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT 133562 | ||| | | ||||| |||| || || || || || || ||||| ||| | Sbjct 280608 GTGAGCGTGTAATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTGGCAGCTTCGCTT 280667 Query 133563 CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTA 133622 | || |||||||| || || ||||| || | || || | || ||||| ||| | | Sbjct 280668 CGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACATTCTCTAATGAAATGA 280727 Query 133623 TTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 | ||| | || || | | ||| |||||||| || ||| Sbjct 280728 TATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTA 280768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471776018853085