Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq145 244 1e-59 seq19 147 2e-30 seq15 141 8e-29 >seq145 Length=640502 Score = 244 bits (270), Expect = 1e-59 Identities = 971/1493 (65%), Gaps = 65/1493 (4%) Strand=Plus/Plus Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209 || |||||| || ||||||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 131317 AGTTTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACAT 131376 Query 138210 TCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAG-TGAGTAACGCGTAAG 138268 || |||||||| || | ||| | || | ||||| |||| | | | || | ||| Sbjct 131377 ACCGGTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTAC-CATAAC 131435 Query 138269 TCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAA 138328 | |||| || | ||| ||||| |||||||| || ||||| |||||||| ||||||| Sbjct 131436 TAGGTTCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAA 131495 Query 138329 TGGCCATGTTAATTAAATTTTTACTTTTC----ATCTCCCACACGGTCTTGTATAGATCA 138384 |||||||| || || |||| | || ||||| || || || || | || Sbjct 131496 CAGCCATGTTGAT----GGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCT 131551 Query 138385 CGAATA-TGTCGCGGTATTGTTGCAATATTTTG-AATGCTCC-CGTTGGCCGCAATGATG 138441 ||| || | ||||| | |||| ||||| | || || || || | |||| || Sbjct 131552 TTTATACTGGC-AGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGC-CAAT-ATT 131608 Query 138442 CGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTG 138501 ||| |||||| ||| || | || ||| | |||| || || | | || Sbjct 131609 AAGTTTTTCATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGA 131668 Query 138502 TTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGC 138561 || | || ||| ||||| | || ||| || || |||||| || ||| | ||| Sbjct 131669 TTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGC 131728 Query 138562 TCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACC 138621 ||||| || |||||||| || ||||| ||||| || | |||||| ||||| || ||| Sbjct 131729 TCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACC 131788 Query 138622 AAAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCGTTCCTTGAGCGACGACCAGTCCCA 138680 | | |||||| || | || | | || || ||| || || || | ||||| | ||| Sbjct 131789 AGCAAAGAATTGCGCACTCCATAATTTTTAATGTCG-TCTTTAAGAGCGGACCAATTCCA 131847 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 | ||| |||| |||| | ||||||||| || || | || || ||| | ||||| Sbjct 131848 TAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACT 131907 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||||| || | ||||| ||| | | || ||||| | || || || | || Sbjct 131908 ACCTTCATATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGC 131967 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG---GCCTCGGCGCTCTC 138857 ||| || || || ||||| ||| || | ||| || ||| || | |||| || Sbjct 131968 ACCGTAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGGCCAGCATTTTCGCTTTC 132024 Query 138858 GTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGG 138917 ||| || || | | | | ||||| || | ||||| ||||| | |||| || Sbjct 132025 GTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGG 132084 Query 138918 GCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGAT 138974 ||||| || | ||| || |||| |||||| | ||||| || || |||||||| Sbjct 132085 ACGATGACGTAAATTAGA---TTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGAT 132141 Query 138975 GATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTT-AATCGTTCAAAATCGT 139033 |||||||| | || | | | ||| | | | |||| | | | |||||| | Sbjct 132142 TATTTTGTTGAGGTTCCTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCAT 132200 Query 139034 A-TGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATG 139092 | ||| | || ||| |||| ||| || | || | ||| || || | Sbjct 132201 ATTGTTTATC---TGCCGT-TACGA-----ACATAT---TCAACGC-AATTGATGCCAGA 132247 Query 139093 TTGCACACCGCCACTTCGTC-GGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACT 139151 ||||| || || | ||| || | | || | |||||||| ||||| | |||||| ||||| Sbjct 132248 TTGCAAACTGCTATTTCTTCAGCCGACG-TATATTCGACGATTTCTGTACACAAGTTACT 132306 Query 139152 ACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAG 139211 || || || || || | ||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct 132307 GCATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGGTTACAAGCGTCTTTGTAAAG 132366 Query 139212 CATATACGGTGTGCCAGTTTCCACTTGTG-TCTCTATAAT--GAATTTGAACAAGTCCCT 139268 ||| || || || || || |||||||| | || ||| | ||| ||||||| | Sbjct 132367 CATGTAAGGAGTTCCGGTCTCCACTTGGGCGCTGCATATTGCGAA---CCACAAGTCACG 132423 Query 139269 AGCTTGTA---TTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTC 139325 |||||||| ||| | | | | ||||| || || ||| ||| | || ||| Sbjct 132424 AGCTTGTATTGTTTTGTTCGCTTTACCCTCGTC---TTCATATTTTATGTACAATTTGTC 132480 Query 139326 GAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCA 139385 ||| || || || | || | | | || || | || ||||| || ||||| Sbjct 132481 AAATTTGTCTCCATAAACTTCTTCCAAGCCAGGGCATTTATGGGGGCACATTAGAGACCA 132540 Query 139386 TACGC-CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCA 139444 | || | | |||| || | |||||||||||||||| ||||||| ||| | | | Sbjct 132541 -ATGCTCATCAGCCTCCACTCTTTTCATGAACAGATCCGGTATCCACAGAGCATAAAATA 132599 Query 139445 AATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAA 139504 | || || || | || || |||| | || ||||| || || || || |||| Sbjct 132600 AGTCCCGTGCACGATCCTCCTCTTTACCCGTATTTTTTTTCAAATTTAGAAATTCGAAAA 132659 Query 139505 CGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTT 139561 || |||||||| || || | || || || | || || ||||| ||||||| Sbjct 132660 TATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTT 132719 Query 139562 GATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCG 139614 | ||||| | || || |||| ||||| | |||||||| || | |||||| Sbjct 132720 GGTCGACATAACGGGCAACATTGTTGAACAAACGCAACATAGGAACAAGACCG 132772 >seq19 Length=2240402 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAA-C 24777 ||||| | ||||| ||||| || || | || || ||| | | || || | |||| | Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | |||| ||||| ||||||||||| ||||| || ||||| || || || ||||||||||| Sbjct 941499 GTTAAAGCAAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTT 941557 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 ||| || |||||| |||| ||| | | | |||| || || ||||| ||||||||||| Sbjct 941558 TGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATC 941617 Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||||||||| | |||||||| Sbjct 941618 TACTCTCCACTTGGTGTTGCGTCTCCGCGGAGG 941650 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| |||| || ||||||||||| | ||||| ||| | | Sbjct 931749 ATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 931808 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| || ||||| || || || ||||| Sbjct 931809 GATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAG 931868 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || || || |||| || | | | |||| ||||| ||| Sbjct 931869 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 931928 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| |||||| | || ||||| | || ||||||| || Sbjct 931929 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | ||||| ||||| || || | || || ||| | | Sbjct 939662 ATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCG 939721 Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || |||||||||| ||||||||||| ||||| || ||||| || || Sbjct 939722 GATACTATCGAAAACGTTAAAACAAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCA 939780 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || |||||| |||| ||| | | | |||| || || || Sbjct 939781 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAA 939840 Query 24883 CATTCAAAAGGA 24894 ||| |||||||| Sbjct 939841 CATACAAAAGGA 939852 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || || || || || || | ||||| || | || Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||| ||||| || || || ||||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || || || |||| || | | | |||| ||||| ||| Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| |||||| | || ||||| | || ||||||| || Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933582 Score = 116 bits (128), Expect = 3e-21 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||| |||| | || || | || || |||||||| || | || || || |||| | Sbjct 939434 ATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGA-GCCATC 939492 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| || | || || | |||||| ||| || ||||| ||||||||| | || || |||| Sbjct 939493 CGATACTATTGAGAATGTTAAAACTAAA-ATTCAAGATAAAGAAGGAGTCCCACCAGATC 939551 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||||||||||||||||| || |||||| | || || | | | || || || | Sbjct 939552 AACAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTCCGACTACA 939611 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||| || |||||||| || || ||||| || || Sbjct 939612 ACATTCAGAAAGAATCGACGCTCCATTTGGTTTTACG 939648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || || || || || || | ||||| || | || Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||| ||||| || || || ||||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 ||||||||||| ||||| || || || |||| || || || || |||| ||||| Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGA--CG-GACGCACTTTGTCCGATTAC 932153 Query 24881 AACATTCAAAAGGA 24894 |||||||| ||||| Sbjct 932154 AACATTCAGAAGGA 932167 >seq15 Length=3179940 Score = 141 bits (156), Expect = 8e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || || || ||||||||||| | ||||| || | || Sbjct 2518863 ATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCC 2518922 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || || || |||||||| || ||||| |||||| Sbjct 2518923 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAA 2518982 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || ||||| |||| ||| | | | || || |||||| Sbjct 2518983 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTATAAC 2519042 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || |||||||| |||||| | |||||||| | || | ||||| ||| || ||||||| Sbjct 2519043 ATACAAAAGGAGTCGACATTGCACTTGGTACTCCGTCTCCGCGGTGGCATAATTGAGCCA 2519102 Query 24944 ACG 24946 || Sbjct 2519103 TCG 2519105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885199697400