Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq15 129 9e-25 seq19 116 6e-21 seq192 114 2e-20 seq69 95.1 2e-14 >seq15 Length=3179940 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || || | | || Sbjct 2518864 TGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCG 2518923 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| || ||||||||||||||| || ||||||| Sbjct 2518924 ACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAAC 2518983 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || |||||||| || ||| | |||||| | || ||||| | Sbjct 2518984 AACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTATAACA 2519043 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||| || ||||| | || || ||| Sbjct 2519044 TACAAAAGGAGTCGACATTGCACTTGGTA 2519072 >seq19 Length=2240402 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||||||||| || ||||| |||||| | || || |||| | Sbjct 931750 TGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCGG 931809 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| |||||| ||| ||| ||||| ||||| || ||||| | Sbjct 931810 ATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAGC 931869 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || || ||||| || || | || || | ||||| || | Sbjct 931870 AACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAACA 931929 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || || ||||| | ||||| || |||| Sbjct 931930 TTCAGAAGGAGTCGACATTGCATTTGGTCCTACG 931963 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| | ||| | || ||||| || || ||||| || || | || || || | || Sbjct 939435 TGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCATCCG 939494 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| |||| |||||| ||| ||||||||| | ||||| ||||||| Sbjct 939495 ATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGATCAAC 939554 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || ||||| ||||| || | || | | || || || | Sbjct 939555 AACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTCCGACTACAACA 939614 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || ||||||||||| ||||||| || ||||| Sbjct 939615 TTCAGAAAGAATCGACGCTCCATTTGGTTTTACG 939648 >seq192 Length=539225 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| |||| || || || || ||| |||| || |||| | Sbjct 278203 TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGG 278262 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||||||| || || || ||||| || ||||||||||| || | Sbjct 278263 ACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGC 278322 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | ||||| || || || ||||| || ||| | | || || | |||||||||| Sbjct 278323 AACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATA 278382 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | ||| | || || || || |||| || Sbjct 278383 TTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428 >seq69 Length=1091995 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||||| || || || | ||| | |||| |||| | || Sbjct 837273 TGCAGATTTTCGTGAAAACGTTAACGGGCAATACCCTCACTTTAGATGCCGAACCGACCG 837332 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || | ||| | || || ||| || ||||| ||||| |||||| Sbjct 837333 ATACTATTGAGAAGATTAAAGCGGAGATTCAGGATAAGGACGGCATCCCACCAAATCAAC 837392 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||| ||| || || || |||| ||| | | ||||||| | ||||| | Sbjct 837393 GCCGATTGATTTATGCCGGCAAGCAGCTAGAAGATGGTTGCACGTTAATGCACTATAACA 837452 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 ||||||| | |||||||||||| | | ||||| || Sbjct 837453 TACAAAAGGGCTCGACTATCCATATGATTTTACGTTT 837489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786144731288600