Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq192 127 2e-24 seq145 123 2e-23 seq19 122 9e-23 seq15 109 5e-19 >seq192 Length=539225 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| |||||||| || | ||| | || ||||||||||| || || |||||| | Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | ||| || || || | |||| |||||||| ||||| || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||| || ||||| | ||| | ||||| | |||||| || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 278201 >seq145 Length=640502 Score = 123 bits (136), Expect = 2e-23 Identities = 437/675 (65%), Gaps = 17/675 (3%) Strand=Plus/Plus Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 || ||||| ||||||||||| || ||||| || || | || || ||||| || Sbjct 131726 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCT 131785 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898 || ||||| ||||| || | ||| || |||| || | ||| | ||||| | | Sbjct 131786 ACCAGCAAAGAATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTC 131845 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 |||| ||| || ||| ||||| ||| ||||| | || |||| || || Sbjct 131846 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGA 131905 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGATG-CCAGTTCGTAACTGGCCTCGAG 151017 ||||| || | || || || | || || ||| || ||||||| || | Sbjct 131906 CTACCTTCATATGTTTCGTACGGACCG-TATTGTTTGGCCAATTGACAACTGGCTTCTAA 131964 Query 151018 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 151077 ||| | | ||| | |||||| |||||||||||| || | | ||| ||||| | Sbjct 131965 GGCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTC 132024 Query 151078 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGG 151137 ||| || |||| | || | ||| || || || ||||| | |||||| ||||| || Sbjct 132025 GTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGG 132084 Query 151138 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAAATTGCGATCAATA 151195 |||||| || | |||||||||| | || || | || | ||| ||||| ||| || Sbjct 132085 ACGATGACGTAAATTAGATTTTCTGGC--TTCCGGCAGCGGATAGTAATTGACATCGATT 132142 Query 151196 ATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 151255 ||||| || | | | || | | || | || | | | ||||||||| | Sbjct 132143 ATTTTGTTGAGGTTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATAT 132202 Query 151256 G---TATCA----TTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGC 151308 |||| ||| | ||||| | ||| |||| || || ||||| || || || Sbjct 132203 TGTTTATCTGCCGTTACGAACATATTCA---ACG-CAATTGATGCCAGATTGCAAACTGC 132258 Query 151309 AGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAA 151368 |||| || | || ||||| || ||||| | |||||| || ||||||||||| Sbjct 132259 TATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGT 132318 Query 151369 TCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGT 151428 || ||| |||||| ||||||||||| |||||||| ||||| | |||||| || || Sbjct 132319 GCCAACATTCTGTTGATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGT 132378 Query 151429 GCCGGTTTCGGCTTG 151443 ||||| || |||| Sbjct 132379 TCCGGTCTCCACTTG 132393 >seq19 Length=2240402 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || || || | |||||||| |||||||||||||| || | Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGAC 941591 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| | ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 941590 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 941531 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | ||| | || || | | ||| || Sbjct 941530 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACC 941471 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTT 137396 || | ||| | ||| || |||||||| ||||| Sbjct 941470 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || || || || |||||||||||| | Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||| || |||||| | |||| |||||||||||| || || Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| || || | | ||| | ||||| | || || ||| Sbjct 933462 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACT 933403 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||||||||| || || ||||||||| Sbjct 933402 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 933355 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 || |||||||||||||| || || ||||| | ||||| | ||||| |||||| || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TG 137339 |||| ||| ||||| || ||||| || ||||| ||||| |||||| |||||| | | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTT-GTTTTAACGTT 939734 Query 137340 TTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 137399 ||| | || || | | ||| || || | ||| | ||| || |||||||| ||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 137400 GAATATTTGCAT 137411 ||||||||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || || || || |||||||||||| | Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||| || |||||| | |||| |||||||||||| || || Sbjct 931915 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 931856 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || |||||| ||| | | ||| | || || | ||||| ||| Sbjct 931855 ATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACT 931796 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| || |||||||| || || |||||||| Sbjct 931795 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCAT 931749 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || || || || || ||||||||| | Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||| ||||| ||| | |||| ||| |||||||| || || Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 933691 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| || | | ||| | ||||| | || || ||| Sbjct 933690 ATACCTTCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 933631 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||||||||| || || ||||||||| Sbjct 933630 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 933583 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 || || || |||||||||||| || |||| |||||| | ||| || |||||| | Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340 |||| |||||||||||| || || || ||||| ||||| ||| || || | | | Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 137400 || | ||||| | || || ||||| | || | |||||||| ||||||||||| || Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 137401 AATATTTGCATA 137412 || ||||||||| Sbjct 931987 AAAATTTGCATA 931976 >seq15 Length=3179940 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || || | ||| || || ||||||||||| || ||| Sbjct 2519090 GCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGA 2519031 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | |||| || | ||||| | |||||| ||||| | |||| |||||| ||||| |||| Sbjct 2519030 TAACGTGCGTCCA-TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAG 2518972 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | ||||||||||| || |||||| || | | ||| | ||||| | || || | Sbjct 2518971 GAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 2518912 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 2518911 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 2518863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488530534506000