Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq135 279 2e-69 seq54 241 4e-58 >seq135 Length=742707 Score = 279 bits (308), Expect = 2e-69 Identities = 666/983 (68%), Gaps = 42/983 (4%) Strand=Plus/Minus Query 188611 CCAAATGAAATTGTTGAATTATT-AGATAATCATATTATTGGACAAGAAAAAGC--AAAA 188667 ||| ||||||| || ||||||| | | ||| | ||||||||||||||||||| |||| Sbjct 50261 CCATATGAAATATTT-AATTATTTAAACAATTACGTTATTGGACAAGAAAAAGCTAAAAA 50203 Query 188668 CGTCAATTAGCTGTATCAGTTTATAATCATTATAAGCGCATTAATGCTCTTA-ATGaaaa 188726 || | || | ||||| ||||| ||||||||||| || | | | || ||| Sbjct 50202 AGT--ACTATCAGTATCTGTTTACAATCATTATAA-------AAAGTTAAAATATTTAAA 50152 Query 188727 atcaaaaaatgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTAC 188786 || | |||| || || ||| | || |||| | ||||| | || |||| || || Sbjct 50151 ATTACAAAACAGTGTTG-AGTTAGGA----AAAAGC-AATGTATTATTGATTGGTCCAAC 50098 Query 188787 TGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCT-GATATGTTACATGTACCTCTAG 188845 |||| || |||||| |||| || ||||||| ||| ||| | || || ||||| | Sbjct 50097 TGGTAGTGGAAAAACACTATTGGCAGAAACATTAGCTAGATTTCTT-CAAGTACCCTTTA 50039 Query 188846 CTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACG 188905 || |||||||| || | |||||||||||||| ||||| || |||||||| ||||| Sbjct 50038 TAATTTCTGATGCTACAACATTAACAGAAGCTGGATATGTCGGAGAAGATGTAGAAAATA 49979 Query 188906 TATTGCTTCGTTTAATCCAAGCAGC-TGATTACGATATCGAATTAGCGGAACGTGGAATT 188964 || | | | ||| | || | || ||||| ||||| || ||| ||| |||||| Sbjct 49978 TAATACAAAGATTATTACA-GAAGTGTGATTTTGATATAAAAAAAGCTCAACATGGAATC 49920 Query 188965 GTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGA 189024 ||||||| |||||| | ||||||||| ||||||||||||| | | || ||||| || Sbjct 49919 ATATATATTGATGAAATTGATAAAATTTCTAGAAAATCAGATAATCCGTCTATTACTAGA 49860 Query 189025 GATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCG 189084 ||||| || || |||||||| |||||||| ||||||||| | || ||||||||| | || Sbjct 49859 GATGTTTCCGGAGAAGGAGTTCAGCAAGCATTATTAAAATTAATAGAAGGTACAATAGCT 49800 Query 189085 AAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACA 189144 ||| ||| |||| ||| | ||||| ||||| |||||| | || | |||||||| Sbjct 49799 TCAGTGCCTAAAAAAGGCGGTAGAAAACATCCTCAACAAGAATTTTTTCATGTAGATACA 49740 Query 189145 ACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAAC--ATTATC---A 189199 |||| || | |||||| ||| ||||| ||| ||| | ||| | |||||| Sbjct 49739 TCTAAAATACTTTTTATTTGTGGCGGAGCATTTTCTGG--ATTAAACCGTATTATCCATC 49682 Query 189200 AGAGACGCGCTACAAAATCAACTTTAGGTTTTGATG--ATAGTGTAGATAAAGTACAAGA 189257 ||||| | |||| | | | || ||| | || || | | ||| | ||| Sbjct 49681 AGAGAATAATAAGAAAAAACAGTATTGGATTTACCGCATTAATGAAAAAAAA--ATCAGA 49624 Query 189258 AGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTA 189317 | |||| | | | |||||| | || | | ||||||| ||||| | | || | Sbjct 49623 A-AAAT--ATAACAATAATAAATTGTTGAATAAAGTTCAACCTGAAGATTTAATCAAATT 49567 Query 189318 TGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTGA 189377 ||| ||||| || ||||| || || | ||||| || | | | | ||| | | || | Sbjct 49566 TGGGTTAATACCTGAATTCATAGGAAGATTACCAATATTATC-AGTATTAGAAGAATTAA 49508 Query 189378 TCGAGAT--GCATTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATAT 189435 | | || | ||| | ||| |||| | | ||| |||| ||| | | ||||||||| Sbjct 49507 GC-ATATCAGAATTAACTAAAGTTTTGATTTCTCCGAAAAATGCTTTAGTAAAACAATAT 49449 Query 189436 CAGAAATTGTTAGATATGGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCA 189495 || || || || | || || || || |||||||| |||| | |||||| || Sbjct 49448 CAATTTTTATTTAATTTAGAAGGAGTAGAGTTAGAATTTAAAAATAATGCATTAATTTCT 49389 Query 189496 ATTGCAGATGAAGCGATTGAACGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAA 189555 ||||| | || | | || | || ||||||||||| || ||| ||| ||||| ||| Sbjct 49388 ATTGCTAAACAATCTCTAAAAAGAAAAACTGGTGCTCGAGGGTTAAGATCTATTATAGAA 49329 Query 189556 AATATTATGTTAGATGTAATGTA 189578 || | |||||| ||||| Sbjct 49328 CGCATCTTATTAGATACCATGTA 49306 Score = 129 bits (142), Expect = 2e-24 Identities = 323/482 (67%), Gaps = 28/482 (6%) Strand=Plus/Minus Query 54149 AAGATACCAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAAT 54208 ||||| ||||| || ||||||||||| ||||| ||||| || ||| |||||| Sbjct 587657 AAGATTTCAACCGGCCACTCCAACTTTTTTAAATTGTGGTAAAAAACAACGTGGAGAATA 587598 Query 54209 GGTTTCTTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGT--TTCAATATC 54266 | || ||||| |||||| || || |||| || | || ||||| | ||||| Sbjct 587597 TATATCATGTTTTTTATTACGTATAGAAGATAATATGGAATCTATTGGACGTGCAATA-- 587540 Query 54267 AATACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAAC-- 54324 ||| | || | || | || |||| ||||| || || | || ||| | ||| Sbjct 587539 AATGCAGCTTTACAGCTTTCCAAAAGAGGCGGAGGAGTATCATT-----TTTATTAACAA 587485 Query 54325 -TTAGAGGAAGAAAAGAGCAA--ATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTAC 54381 || || || | |||| |||||| |||| | || |||||||| | ||| Sbjct 587484 ATTTAAGAGAGTCAGGAGCTCCCATTAAATATATTAAAAATCAATCTTCTGGAATTATAC 587425 Query 54382 CAGTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAG 54441 |||| |||||| | |||||||| |||||||| || ||||| | || || ||| Sbjct 587424 CAGTCATGAAAATGCTAGAAGATGCTTTCTCTTACGCAAATCAATTAGGTGCTCGACAAG 587365 Query 54442 GCGCTGGAGCTGTTTACTTAAA----CATCTTCCACTGGGATATTATTGAATTCTTAGAT 54497 | ||||||||||| || || | |||| ||| |||||| | |||| ||||| Sbjct 587364 GAGCTGGAGCTGTATATTTGCATGCTCATCATCC----TGATATTTTAAAATTTTTAGAC 587309 Query 54498 ACTAAAAAGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGG-ATTA-- 54554 |||||||| ||||| ||||||||| ||||| || |||||||| | || ||| Sbjct 587308 ACTAAAAAAGAAAATGCCGATGAAAAAATTAGAATAAAAACTTTATCTTTAGGTGTTATT 587249 Query 54555 ATTGCTGAAAAAATCTTCTTCCAATTAGCAAAAAGAAACGAAGAAATGTATGTTTTTGCT 54614 ||| |||| | | || || |||||||||||| ||| | ||||||| | | ||| || Sbjct 587248 ATTCCTGATATTA-CT--TTTCAATTAGCAAAAGAAAATAAGGAAATGTGTTTATTTTCT 587192 Query 54615 CC 54616 || Sbjct 587191 CC 587190 Score = 89.7 bits (98), Expect = 2e-12 Identities = 201/298 (67%), Gaps = 23/298 (8%) Strand=Plus/Plus Query 182230 ATTATTGATCGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATT 182289 ||||||| || ||||||||||||||| | || || || |||||| || ||| ||||| Sbjct 396180 ATTATTGGACGTGCTTTACCTGATGCACGTGATGGTTTGAAACCAGTGCATCGTAGAATT 396239 Query 182290 TTATATGCTTTATGGGATTTA---GGAATGCTACCTCATAAACCATATCGAAAATCAGCA 182346 |||| ||| ||| | ||| | |||| | ||||| | ||| ||||||||| Sbjct 396240 TTATTTGC--AATGAAAATTATTGGTAATGAT-TGGAATAAAGCGTATAAAAAATCAGC- 396295 Query 182347 ACAGTGAAT----GGCCACGTAATGGGTAATTTCCATCCACATGGTGATAC------TTA 182396 | | || ||| |||| || ||||| | ||||| ||||| ||||| || Sbjct 396296 ---GCGTATTGTCGGCAACGTTATCGGTAAATATCATCCGCATGGAGATACAGCAGTATA 396352 Query 182397 TGGTGTAATGGTAAATATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCA 182456 || | || || |||| || | |||| | | |||||| || | |||||||||| Sbjct 396353 TGATACTATTGTGCGTATGGCACAAAAATTTTCTTTACGATATACACTTATTGATGGTCA 396412 Query 182457 GGGTAACTTTGGTAACCCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAA 182514 || || || ||| || | |||||||||| || ||||| ||| | ||||| ||| Sbjct 396413 AGGAAATTTCGGT---TCAATTGATGGTGATGCCGCTGCAGCAATGAGATATACAGAA 396467 >seq54 Length=1154455 Score = 241 bits (266), Expect = 4e-58 Identities = 306/421 (73%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||| || |||||||| ||||| || || | || ||||| | ||| | | | | ||| Sbjct 1055346 TTGGTCCCACTGGTTCTGGTAAGACTTTGCTAGCCAAAACACTTGCTAAAGTTTCAGATG 1055287 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | || | ||||| ||||||| || ||||||| || || |||||||| ||||| |||| Sbjct 1055286 TGCCATTTGCTATGGCTGATGCGACAACTTTAACTGAGGCAGGTTATGTGGGTGATGATG 1055227 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAAC 188956 | |||| ||| ||| |||||| | ||||| || |||| || | | | ||| | | Sbjct 1055226 TAGAAAGCGTGTTGTCGCGTTTATTACAAGCTGCAAATTATGACGTTGCAAAAGCACAGC 1055167 Query 188957 GTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA 189016 |||| || || | ||| |||||| |||| || ||| | |||||||| |||||||| || | Sbjct 1055166 GTGGTATAGTGTTTATAGATGAAATAGACAAGATTACAAGAAAATCTGAAAGCACTTCAA 1055107 Query 189017 TTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTA 189076 | ||||| || || || || ||||| || ||||||||| | | || || || || |||| Sbjct 1055106 TAACCCGTGACGTTTCAGGTGAAGGGGTCCAGCAAGCTCTGCTTAAGATTATGGAGGGTA 1055047 Query 189077 CAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAA 189136 ||||||| | ||||| || ||||| || || |||||||| || ||||| | | || Sbjct 1055046 CAGTTGCTTATGTTCCGCCACAAGGAGGGCGAAAACACCCACAACAAGAGTTTATACAAG 1054987 Query 189137 TAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTA 189196 | ||||| | ||| || | |||||| ||| ||||| ||||| || || || || |||| Sbjct 1054986 TGGATACTAGTAACATACTATTTATTTGTGGAGGAGCTTTTGAAGGCCTCGATAAGATTA 1054927 Query 189197 T 189197 | Sbjct 1054926 T 1054926 Score = 96.9 bits (106), Expect = 1e-14 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 403934 ATATTGTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAG 403993 || ||||| ||| ||||||||||||||||||||| |||||||||||| |||||||| Sbjct 759671 ATGTTGTGTGCCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTAG 759730 Query 403994 GTTCGAATCCTACCAGGC 404011 |||||||||||||| ||| Sbjct 759731 GTTCGAATCCTACCGGGC 759748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591865426043840