Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq19 159 7e-34 seq15 154 3e-32 seq192 143 5e-29 seq615 102 2e-16 seq264 93.3 8e-14 seq884 84.2 4e-11 >seq19 Length=2240402 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || || |||| || || || ||||| || || ||||| | Sbjct 931977 TACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGG 931918 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| || |||||||| || | | ||| |||||||| | Sbjct 931917 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 931858 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||||||||| || ||||| |||||||| || ||||| ||||| | Sbjct 931857 GAATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAA 931798 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||||| || || ||||| || || || || ||||| || |||||| || Sbjct 931797 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTTT 931745 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || || |||| || || || ||||| || || ||||| | Sbjct 933584 TACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGG 933525 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| || |||||||| || | | ||| |||||||| | Sbjct 933524 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 933465 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || || || |||||||| || || ||| || | Sbjct 933464 GAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGA 933405 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || |||||||| ||||| || || ||||| || ||||| Sbjct 933404 CTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 143 bits (158), Expect = 5e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| | ||| || || || || ||||||||||| || || || || || || | | || Sbjct 939649 ACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 939590 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 | ||||| ||||| ||||||||||| | | |||||||||||| || | |||||| || Sbjct 939589 ATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTT 939530 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| || | ||| ||||| ||||| ||||| || || || ||||| || || Sbjct 939529 ATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGAT 939470 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||| || || | ||||||| Sbjct 939469 AGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATT 939433 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||||| || ||||| ||||||||||| || ||||| || || ||||| Sbjct 941651 ACCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGA 941592 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || ||||| | ||||| ||||||||||| | | || || |||||||| Sbjct 941591 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 941532 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| || |||||||| || ||||| || ||||| | ||| || Sbjct 941531 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCAC 941472 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 |||||||| ||||| || || ||||| || || Sbjct 941471 CTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || ||||| || | | | | |||||||| | ||| || |||||||| Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | | ||| |||||||| || || |||||||| ||||||||||| || || || ||| Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTT 932048 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| || || ||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 932047 TCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACA 931988 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 931987 AAAATTTGCAT 931977 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || || ||||| || || ||||| | | | || ||||| | ||||| ||||||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | | || || |||||||| || |||||||| ||||| || |||| ||| || ||| Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || ||||| | ||| || |||||||| ||||| || || ||||| || || ||| Sbjct 939732 TCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACA 939673 Query 82800 AATATCTGCATT 82811 ||||| |||||| Sbjct 939672 AATATTTGCATT 939661 >seq15 Length=3179940 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || || || || ||||| ||||| || |||| | | || Sbjct 2519078 ACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCC 2519019 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||| ||||| || || | | ||||||||||||||| || ||||| || Sbjct 2519018 ATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 2518959 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| || || || ||||||||||| || || ||| || ||||||||||| || Sbjct 2518958 ATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAAT 2518899 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 || ||||| || | || || || || || |||||| ||||||| Sbjct 2518898 AGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 2518854 >seq192 Length=539225 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||||| || | || | || |||||||| || ||||||||||| || Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||| ||||| || || || | || ||| || || || || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || |||||||| |||||||||||||| || || || ||||| || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | || |||||||| |||||||| Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 278202 >seq615 Length=102487 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 144079 TATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTT 144138 ||||||||||| | || | | | ||||| | || |||||| | || ||||| ||| | | Sbjct 13193 TATGCGATAATCTTCTTATGTGTGTAGTACGTGCTTGGGATTTGAAAAAACCGCTTTTAT 13252 Query 144139 TTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATA 144198 ||||||| ||||||||||| | |||| || ||||| |||||| | || || ||| Sbjct 13253 TTTGCCCTGCTATGAATACACGCATGTATGATCATCCAATTACATCGGATCAAATTAATA 13312 Query 144199 CTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAG 144258 |||||| | ||| | | |||||| | |||||| ||| | ||| ||||| | Sbjct 13313 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCAAAGACTCTAATGTGTGGTG 13372 Query 144259 ACGTAGGAAATGGTGCTATGGCAGAAGTT 144287 | || ||||| |||||||| |||||| Sbjct 13373 ATACGGGCAATGGGGCTATGGCCGAAGTT 13401 >seq264 Length=376872 Score = 93.3 bits (102), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 10/164 (6%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||||||||| | || | || ||| |||||||||||| |||||||| || Sbjct 175826 CCACCACGCAAACGCAGGATCAATTACAAAGTTTATTCTTTCTGTACGTTATAATCCGA- 175768 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 |||||||| | ||| |||| | ||| || | | | |||||||| || Sbjct 175767 ---------CCGTCTTCCAATTGCTTTCGACAAAAAATCATACGCTTCTGATCTGGTGGG 175717 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 |||||||||||||||||||| || | ||| ||||| ||||| || Sbjct 175716 ATTCCTTCCTTATCTTGAATTTTAGATTTAACATTCTCAATAGT 175673 >seq884 Length=18444 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 198342 TGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATG 198401 |||||| || | ||| | || |||| |||| || |||||||| ||||||| | ||| Sbjct 4156 TGGAATTCAGCTCAACTGCAATTGATGCGAGAGGGTAAAATGCACGGTTTTTTGCGTATG 4215 Query 198402 TACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTT-GAGTTATAG 198460 || |||||||||||||| | |||||| | | || || ||||||||||| || || | | Sbjct 4216 TATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAATTTTCG 4275 Query 198461 TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 198518 || | |||| ||| ||| | || || |||||||| || || || || ||| Sbjct 4276 CTACT-TTTAAATGATAGATACAGTTTGGATGGAACGGATCCCAATGGTTATGTCGGT 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981799461847495