Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq904 95.1 2e-14 seq666 95.1 2e-14 seq553 95.1 2e-14 seq396 95.1 2e-14 seq360 95.1 2e-14 seq316 95.1 2e-14 seq58 95.1 2e-14 seq9 95.1 2e-14 seq398 87.8 2e-12 >seq904 Length=17261 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 14934 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 14875 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 14874 CCCGTCGGGGAG 14863 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 14861 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 14920 Query 139411 TATACTAACGAGGAT 139425 ||||||| ||||||| Sbjct 14921 TATACTATCGAGGAT 14935 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 14934 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 14875 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 14874 CCCGTCGGGGAG 14863 >seq666 Length=98292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 45930 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 45871 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 45870 CCCGTCGGGGAG 45859 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 42959 TAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 42900 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 42899 TTCCCCGTCGGGGAG 42885 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 42958 AGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 42899 Query 11787 TCCCCGACGAGGAG 11800 |||||| || |||| Sbjct 42898 TCCCCGTCGGGGAG 42885 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 45857 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 45916 Query 139411 TATACTAACGAGGA 139424 ||||||| |||||| Sbjct 45917 TATACTATCGAGGA 45930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 45931 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 45872 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 45871 CCCCGTCGGGGAG 45859 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| | |||||| Sbjct 42884 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 42943 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 42944 ATACTATCGAGGA 42956 >seq553 Length=143938 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 39284 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 39225 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 39224 CCCGTCGGGGAG 39213 Score = 93.3 bits (102), Expect = 6e-14 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 11720 TGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGG 11778 |||||| |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||| Sbjct 39292 TGTAAC--AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGG 39235 Query 11779 GGTTCGATTCCCCGACGAGGAGGGA 11803 ||||| |||||||| || |||| || Sbjct 39234 GGTTCAATTCCCCGTCGGGGAGTGA 39210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 39212 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 39271 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 39272 ATACTATCGAGGA 39284 >seq396 Length=229507 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 132295 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 132236 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 132235 CCCGTCGGGGAG 132224 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 132296 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 132237 Query 11788 CCCCGACGAGGAGGGAGGTTAACGCGA 11814 ||||| || |||| | || |||||| Sbjct 132236 CCCCGTCGGGGAGTGCGGAAGACGCGA 132210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 132223 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 132282 Query 139412 ATACTAACGAGGA 139424 |||||| |||||| Sbjct 132283 ATACTATCGAGGA 132295 >seq360 Length=283720 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| | Sbjct 8862 TAGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 8921 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 8922 TTCCCCGTCGGGGAG 8936 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 9489 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 9548 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 9549 CCCGTCGGGGAG 9560 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 8863 AGTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 8922 Query 11787 TCCCCGACGAGGAGGGA 11803 |||||| || |||| || Sbjct 8923 TCCCCGTCGGGGAGTGA 8939 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 9562 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 9503 Query 139411 TATACTAACGAGGATTTTGG 139430 ||||||| |||||| |||| Sbjct 9502 TATACTATCGAGGACATTGG 9483 Score = 89.7 bits (98), Expect = 7e-13 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 8937 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 8878 Query 139412 ATACTAACGAGGATTTTGGTACACGCTGAATGCATTTTTT 139451 |||||| |||||| | || | |||| |||||||||| Sbjct 8877 ATACTATCGAGGACTATG--AACGGCTG-CTGCATTTTTT 8841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 9488 GTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 9547 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 9548 CCCCGTCGGGGAG 9560 >seq316 Length=313634 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 313061 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 313120 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 313121 CCCGTCGGGGAG 313132 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 313134 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 313075 Query 139411 TATACTAACGAGGAT 139425 ||||||| ||||||| Sbjct 313074 TATACTATCGAGGAT 313060 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 313061 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 313120 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 313121 CCCGTCGGGGAG 313132 >seq58 Length=1195752 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 139348 CACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAAC 139407 || |||||| || |||||| | |||||||||||||||| | |||| |||||||| |||| Sbjct 969411 CAGAACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 969470 Query 139408 CACTATACTAACGAGGATTTTG 139429 |||||||||| ||||||| ||| Sbjct 969471 CACTATACTATCGAGGATGTTG 969492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 969487 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 969428 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 969427 CCCGTCGGGGAG 969416 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 969487 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 969428 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 969427 CCCGTCGGGGAG 969416 >seq9 Length=3654582 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1484393 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1484334 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 1484333 CCCGTCGGGGAG 1484322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 1484320 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 1484379 Query 139411 TATACTAACGAGGAT 139425 ||||||| ||||||| Sbjct 1484380 TATACTATCGAGGAT 1484394 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1484393 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1484334 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 1484333 CCCGTCGGGGAG 1484322 >seq398 Length=223141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||| ||| Sbjct 223041 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGAGGGAGACCGGGGTTCAATTT 223100 Query 8718 CCCGACGAGGAGC 8730 |||| || ||||| Sbjct 223101 CCCGTCGGGGAGC 223113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652826805965200