Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq145 134 3e-26 seq170 109 1e-18 seq234 107 5e-18 seq367 105 2e-17 seq162 84.2 5e-11 >seq145 Length=640502 Score = 134 bits (148), Expect = 3e-26 Identities = 555/861 (64%), Gaps = 21/861 (2%) Strand=Plus/Minus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 |||||| || |||||| | ||||| |||| || | | ||||| | || | || Sbjct 133147 TTTTGGCTTTAAAACTTTAGAACGGTCTTACTTGTTAAAGATTAATGGGAAAATTGTGGA 133088 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || ||||| ||||| | ||||| || ||||| ||||| || |||| ||| |||| Sbjct 133087 GCGACCACAACATATGTTAATGCGTGTCGCTATTGGCATTCACGGCGATGACATTGAAGC 133028 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCT 110485 | ||||||| |||| || | | | || ||||||| | || || | Sbjct 133027 GGCTATTGAAACTTATAATCTCATGTCGGGGCGTTACTTTACTCATGCTTCCCCAACTTT 132968 Query 110486 ATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGA 110545 |||| || | || | | ||||||| | || ||||| | ||| || || Sbjct 132967 ATTTGGTGCTGCTACCATACGCCCACAATTGTCGTCCTGCTTCTTGCTAACTATGCCAGA 132908 Query 110546 TGATTCTATTGAAGGTATTTATGATG-CTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 || || |||| |||||| |||| | || | | || |||| |||||||| Sbjct 132907 AGACTCCGTTGATGGTATT-ATGAAGGCTGTAGACCAATGTGCTAAAATTTCTAAGTCGG 132849 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA----TCGCA 110660 | || ||||| ||| | | ||||| || || ||||||| | || | | | | Sbjct 132848 CCGGTGGAATAGGTCTAAATATTCATTGCATACGAGCAAAAGGGACTAAGACATCTGGTA 132789 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | ||||| | || || || || |||||||| ||||| | | |||||| | ||| Sbjct 132788 ATAGCGATGTGT-CTG--AC-GGTCTTGTTCCTATGTTGCGTTTGTTCAACAATGTTGCC 132733 Query 110721 AAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCT 110777 ||||| | ||||||||| | | | || | |||||||| || | || ||| Sbjct 132732 CGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGCCT 132673 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGAACA 110836 ||||| ||||||| || ||||| || || || ||||| | || | || || | Sbjct 132672 TGGCACGCAGATATTTTCGAATTTCTA-AATTTGAAAAAAAATACGGGTAAAGAGGAGGA 132614 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||||| || ||||||||||| ||||||| | ||| | ||||||||| | || | Sbjct 132613 TCGTGCACGGGACTTATTTTATGCTCTGTGGATACCGGATCTGTTCATGAAAAGAGTGGA 132554 Query 110897 AGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | ||| |||| |||||||| ||||| || ||| | ||||| | || || | Sbjct 132553 GGCTGATGAGCAT-TGGTCTCTAATGTGCCCCCATAAATGCCCTGGCTTGGAAGAAGTTT 132495 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC 111015 ||||| | | ||||| | | ||| |||||||||| | || || || |||| Sbjct 132494 ATGGAGACAAATTTGACAAATTGTACATAAAATATGAAGACGAGGGTAAAGCGAACAAAA 132435 Query 111016 AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCAC--AAGTTGAAACTGGAAC 111073 ||| | ||||| || | |||||| ||| || | | | |||| || || ||||| Sbjct 132434 CAATACAAGCTCGTGACTTGTGGTTCGCAATA--TGCAGCGCCCAAGTGGAGACCGGAAC 132377 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 |||||| || | || ||||| | ||| |||||| ||||||| |||| | || || Sbjct 132376 TCCTTACATGCTTTACAAAGACGCTTGTAACCGCAAAAGTAATCAACAGAATGTTGGCAC 132317 Query 111134 AATTAAGTCTAGTAATTTGTG 111154 || || | ||||| ||||| Sbjct 132316 TATAAAATGCAGTAACTTGTG 132296 >seq170 Length=571011 Score = 109 bits (120), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||| ||| || ||||| ||| |||| ||| | |||||| | || || || Sbjct 152840 GATATAGTTGAGAGGCATTTATGTGATGGTGATATAGTTTTATTCAATCGCCAGCCCTCG 152781 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT--ATTATCTGGATTGACATTTC 305411 || |||||||||||||| ||| |||| | | ||| || | || | | || || | Sbjct 152780 CTTCATAAAATGTCTATAATGTGTCATCAGGCCAAGGTGCAGCCTCAGCGT--ACCTTCC 152723 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 | || |||| | | |||||||||||||||||||| |||||||| |||||||| |||||| Sbjct 152722 GTTTTAATGAATGCGCTTGTACGCCTTATAATGCTGATTTTGACGGAGATGAGATGAATT 152663 Query 305472 TGCATGTACCTCA 305484 ||||| |||| || Sbjct 152662 TGCATCTACCACA 152650 >seq234 Length=462357 Score = 107 bits (118), Expect = 5e-18 Identities = 258/387 (67%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 |||| ||||| || ||||||||| | ||||| | |||| ||||||||| | Sbjct 280551 TTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGATATCATCGCATTCGGCTAATTTTGGTG 280610 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 | | ||||||| ||| || ||||||||||||||| || ||| | | | Sbjct 280611 AGCGTGTAATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTGGCAGCTTCGCTTCGA 280670 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | |||||||| ||||| |||||| | ||||| || | |||| || ||| || | || | Sbjct 280671 TATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACATTCTCTAATGAAATGATAT 280730 Query 131976 CGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATA 132035 | | ||||||| ||||| ||||||||| ||||||| | || || ||||| | | Sbjct 280731 CACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTAATGTTTA-AACATTTGATACAA 280789 Query 132036 AACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 || || | ||| || ||| || | |||| || || ||| | || || || || Sbjct 280790 AAACCGA-GTAAAGAACGGATTTTGGAAATAATAACAGATGCCGTTAAAATTGAAAAAGA 280848 Query 132094 GTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGA 132153 |||| | ||||| || || || | | || ||||| ||||| || |||| | Sbjct 280849 GTTTTTGACAGAGGCCTTACCAGTCGACTTAATTGGCATGAACAGCGAAAGTATGTGCAA 280908 Query 132154 GTACATTGAATTCGTTGCTGATCGTTT 132180 || || |||| ||||| |||||||| Sbjct 280909 ATATATAGAATATGTTGCCGATCGTTT 280935 >seq367 Length=767333 Score = 105 bits (116), Expect = 2e-17 Identities = 136/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| || |||| | |||| | |||||| | ||||| | ||||| |||||| Sbjct 751724 AGACATTTGCGCGATGATGACTTGGTTATATTCAATCGTCAACCTACTCTGCACAAAATG 751783 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| || | | | ||||| || | ||| | || Sbjct 751784 AGTATGATGGGTCATCGTGTTAAAGTGTTGCCATGGTCTACATTCCGTATGAATTT--GT 751841 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || || ||||| ||||||||||| || ||||||||| |||||||||| Sbjct 751842 -CTTGTACTTCCCCATACAATGCAGATTTTGATGGTGACGAAATGAATTTGCATGTACCG 751900 Query 305483 CAATC 305487 ||||| Sbjct 751901 CAATC 751905 >seq162 Length=671509 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/213 (70%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 279353 TTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAA 279412 ||||| || |||||| | || || |||| || || ||| |||||| |||||||||| Sbjct 551179 TTACGTTACGGTAAAGTGATGATCATGACTGATCAGGATCAAGATGGTTCTCACATTAAA 551238 Query 279413 GGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT--GAATCAAAATTTTG 279470 || || || |||||| || | || ||||||||||||||| | | || || Sbjct 551239 GGTTTGCTAATTAATTTCATTCACACAAACTGGCCAGAATTGTTACGCTTACCGTTTCTG 551298 Query 279471 TAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT---AT 279527 || | |||| ||| |||||| |||| || || || ||||| || ||| | | Sbjct 551299 GAA--GAGTTTATAACGCCAATTGTTAAAGCTACGAA---GAAAAATGAGGAACTTTCGT 551353 Query 279528 TTTATTCATTG-CAGAAGTTTGAACAATGGAAA 279559 ||||||||||| ||||| ||||| |||||||| Sbjct 551354 TTTATTCATTGCCAGAA-TTTGAGGAATGGAAA 551385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186779270684005