Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq19 114 3e-20 seq192 113 1e-19 seq15 86.0 1e-11 >seq19 Length=2240402 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG-AATC 206243 ||||| | || |||||||||||||||||||| |||||| || || || ||| || | Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||||||| || ||||| || ||||| ||| || ||| || | | ||||| Sbjct 941499 GTTAAAGCAAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTT 941557 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || |||||||||||||| | || ||| | || |||||| | || || || || Sbjct 941558 TGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATC 941617 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||| | || ||| | || || Sbjct 941618 TACTCTCCACTTGGTGTTGCGTCTCCG 941644 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | || |||||||||||||||||||| |||||| || || Sbjct 939665 CAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGAT 939724 Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||| || | |||| ||||| || ||||| || ||||| ||| || ||| || Sbjct 939725 ACTATCGAAAACGTTAAAACAAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCA 939783 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || |||||||||||||| | || ||| | || |||||| | Sbjct 939784 GCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACAT 939843 Query 206352 CCAGAAAGA 206360 || || || Sbjct 939844 ACAAAAGGA 939852 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||||||||||| ||| || || || ||||| Sbjct 931764 AAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCGGATACTATCGAAAAT 931823 Query 206245 G-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | |||||| ||| |||||||| || ||||| ||| || || ||| | | || || Sbjct 931824 GTTAAAGCTAAA-ATTCAAGATAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATTTT 931882 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| |||||||| ||| | || ||| ||||||||||| | ||||| ||||| Sbjct 931883 TGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAACATTCAGAAGGAGTC 931942 Query 206364 TAC 206366 || Sbjct 931943 GAC 931945 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || || || ||||| || ||||| || ||| ||||| | Sbjct 931985 TTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCCGACACTAT 932044 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||||||||| || ||||| ||| || || ||| | | Sbjct 932045 TGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTT 932104 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || ||||| |||||||| ||| | |||||| ||||||||||| | ||||| Sbjct 932105 GATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAACATTCAGAA 932164 Query 206358 AGAGT 206362 |||| Sbjct 932165 GGAGT 932169 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || || || ||||| || ||||| || ||| ||||| | Sbjct 933364 TTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCCGACACTAT 933423 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||||||||| || ||||| ||| || || ||| | | Sbjct 933424 TGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTT 933483 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || ||||| |||||||| ||| | || ||| ||||||||||| | ||||| Sbjct 933484 GATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAACATTCAGAA 933543 Query 206358 AGAGTCTAC 206366 ||||| || Sbjct 933544 GGAGTCGAC 933552 >seq192 Length=539225 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||| | || || ||| || ||| Sbjct 278205 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 278264 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| ||||| |||||||| || ||||| |||||| || ||| ||| Sbjct 278265 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 278324 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || |||||||||||||| ||||||||||| | || ||| ||||||| || | Sbjct 278325 CGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATATT 278384 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||| || || | || ||||| ||| Sbjct 278385 CAAAAAGAATCCACCTTACATCTTGTGTTG 278414 >seq15 Length=3179940 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||||||||| || ||| ||||| | ||| Sbjct 2518878 AAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAAT 2518937 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || |||||||| ||| || || ||| | | || ||| Sbjct 2518938 GTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTC 2518997 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||||||| | || || |||| || ||| | || || ||||| Sbjct 2518998 GCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTATAACATACAAAAGGAGTCG 2519057 Query 206365 AC 206366 || Sbjct 2519058 AC 2519059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181787411715805