Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq145 185 8e-42 seq19 113 4e-20 seq15 111 1e-19 seq69 82.4 7e-11 >seq145 Length=640502 Score = 185 bits (204), Expect = 8e-42 Identities = 634/964 (66%), Gaps = 47/964 (5%) Strand=Plus/Plus Query 146679 ATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCG 146738 |||||| ||||| ||||| || || |||||| ||| || | ||||| | | ||| Sbjct 131455 ATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCCATGT---TGATGG- 131510 Query 146739 TTTTGTCTTCA------TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAAT 146792 ||| ||||| |||||||| | ||||| |||| | || | || | || || Sbjct 131511 --TTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTGGCAGGTAT 131568 Query 146793 ACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAAT--AGTGTTTCGTATT-TCGGG 146849 | ||||||||||| || ||||| || || || || ||| |||| | || || Sbjct 131569 GGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATT 131628 Query 146850 CGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTC 146909 | ||||| | || | | | || | || ||||| |||||||| || |||||| Sbjct 131629 CC---AAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTACGATAAACTC 131685 Query 146910 GCCCGCCAGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTAT 146968 || | ||| || |||| || | || | ||| |||| | |||||||||||||| || | Sbjct 131686 ACCAGACAGTACGCGTCGTGTG-TAAATATTTGAAGTGTATGGCTCAAAAGACTCGTTGT 131744 Query 146969 TGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCA 147028 | || | ||||| || || | ||||||||||| || |||| ||| ||||| |||| Sbjct 131745 TACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCA 131804 Query 147029 GACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG--GGCGT 147086 || || |||| ||| || | || ||| | ||| | || || ||||| Sbjct 131805 CTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATA--GATCAGTAGGCGT 131862 Query 147087 CACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGT 147146 | |||||| || || || || | ||| ||| | ||||| || | | || Sbjct 131863 TTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTC 131922 Query 147147 GTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGT 147206 ||| |||| | | ||||||| ||| || || || | || || || ||||| || Sbjct 131923 GTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATATATTGT 131982 Query 147207 TTCGGCGATTTGTTTGTTTAGGACGGTC-GCTTCTTCGCTCTCGTAAGGCATACGCAGAA 147265 ||| |||||||| |||| | ||| | || | |||||| ||||| || ||||| | Sbjct 131983 TTCAAAAATTTGTTTATTTAAG-CGGCCAGCATTTTCGCTTTCGTAGGGATAACGCATTA 132041 Query 147266 GCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG-CTT---TTCG 147321 | | || || || || || |||| || | ||||| || ||||| | | || | Sbjct 132042 AAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAAATTAG 132101 Query 147322 --TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGT 147379 || ||| ||||| || || ||||||| ||| ||| || || |||||||||| Sbjct 132102 ATTTTCTG-GCTTCCGGCA-GC----GGATAGTAATTGACATCGATTATTTTGTTGAGGT 132155 Query 147380 TACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGA 147439 | | || || || | | | ||||||||| | |||||||| ||| | Sbjct 132156 TCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGC-- 132213 Query 147440 CACGT-ACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGC 147497 ||| ||| | |||| || || || ||||||||||| || || | ||||| | | Sbjct 132214 --CGTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCC 132271 Query 147498 GTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTT 147556 | || | || | |||||||| | |||| ||| ||||||||||| | | |||| ||| | Sbjct 132272 GACG-TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTAT-AGTGCCAACATTCT 132329 Query 147557 GCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA 147616 | ||||| ||||| || || || ||||||||| | |||||||| || |||||||| | Sbjct 132330 GTTGATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCA 132389 Query 147617 CTTG 147620 |||| Sbjct 132390 CTTG 132393 >seq19 Length=2240402 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||||||||| | | || ||||| ||||||||||||||| | || || | Sbjct 939648 CGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 939589 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 | ||| | |||||| || | | |||| | ||| ||||||||||| || | ||||||||| Sbjct 939588 TTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTA 939529 Query 132029 TCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | | |||| |||| ||| | || | |||||||| ||||| || || | || | Sbjct 939528 TC-TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGAT 939470 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| || || | ||| | |||||| Sbjct 939469 AGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCAT 939434 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 || ||||| ||||||||||| || || ||| |||||| | |||||| || | | || Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC-TG 132051 || | |||||| || |||||||| || ||||| || || | ||||||||| ||| | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGGATTTTTGTTTTAACGTT 939734 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 ||| | |||||| | | ||||| || | || | |||||| || |||| |||||| | Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 132112 GAAAATCTGCAT 132123 || || ||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || || ||||| ||||||||||| || || ||| | Sbjct 941638 CGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCA 941579 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| || | | |||| | |||||| || |||||||| || ||||| || Sbjct 941578 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 941519 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | | ||||| || | || | | Sbjct 941518 TCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATC 941459 Query 132089 GTTTTACCAGTCAGAGTTTT 132108 ||||| || |||| |||||| Sbjct 941458 GTTTTTCCGGTCAAAGTTTT 941439 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || ||||||||||| ||| || ||| || ||||| Sbjct 931957 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 931898 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || || | | | || | ||| || |||||||| || || ||||| ||||| | Sbjct 931897 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 931838 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | |||||| | || || ||||| | || | ||||| Sbjct 931837 ATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTG 931778 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||||| | || || ||||| Sbjct 931777 CCAGTTAATGTTTTCACAAAGATTTGCAT 931749 >seq15 Length=3179940 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||| |||||| | || || |||||| | ||||| || | Sbjct 2519056 GACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCAGCG 2518997 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||| |||||||||||||| |||||||||||||| |||||| || | Sbjct 2518996 AAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACA 2518937 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| ||||| ||||| | || | ||||| ||||| |||||||| Sbjct 2518936 TTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTA 2518877 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 2518876 ACGAAAATTTGCAT 2518863 >seq69 Length=1091995 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131904 GCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTAC 131963 |||| || |||| || ||| || | || | ||||| ||||| |||| | | || | Sbjct 837491 GCAAACGTAAAATCATATGGATAGTCGAGCCCTTTTGTATGTTATAGTGCATTAACGTGC 837432 Query 131964 GCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023 |||||| ||||| || |||| ||| || | || |||||| ||| || ||||| | Sbjct 837431 AACCATCTTCTAGCTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGGATGCCGT 837372 Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 | ||||| ||| | ||| | || || | |||||||||||| || | || | | Sbjct 837371 CCTTATCCTGAATCTCCGCTTTAATCTTCTCAATAGTATCGGTCGGTTCGGCATCTAAAG 837312 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || || | ||||| | |||||||||||| Sbjct 837311 TGAGGGTATTGCCCGTTAACGTTTTCACGAAAATCTGCAT 837272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598063403800