Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq192 140 3e-28 seq19 100 3e-16 >seq192 Length=539225 Score = 140 bits (154), Expect = 3e-28 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 |||| ||||| | ||||||||||| |||| || || | ||||| | || |||||| Sbjct 278197 ACAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAAC 278256 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || || |||||||| | |||||| || ||| || |||||||| || || |||| Sbjct 278257 CCTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCG 278316 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGA 25347 | |||||| || | |||| || ||| || ||| | ||||||| | | | |||| ||| Sbjct 278317 ACCAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTC--CGA 278374 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||| ||||||||||||||||||||| | ||| | ||||| | ||| |||| ||| Sbjct 278375 TTATAATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGGA 278429 >seq19 Length=2240402 Score = 100 bits (110), Expect = 3e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| ||||||||||| || ||| | || || | ||||| ||| || Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAA-CC 931804 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | ||||||||||| | || ||| |||||| ||||| || ||||| || || || Sbjct 931805 ATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGA 931864 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 ||||||| | | |||| | ||||| ||| | ||||| | | | |||| |||| Sbjct 931865 TCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTC--CGAT 931922 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| || || || || | ||||| || Sbjct 931923 TACAACATTCAGAAGGAGTCGACATTGCATTTGGT 931957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082132085600