Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 8e-16 seq15 98.7 8e-16 >seq19 Length=2240402 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 106249 AGAGTTTAAAA-ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307 ||| ||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||| Sbjct 931737 AGATTTTAAAAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAA 931796 Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367 ||||| ||| || | | | || ||| |||||| || || ||||| | Sbjct 931797 GTTGAACCATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATT 931856 Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427 ||| ||||| ||| | | |||| ||| ||||| ||||| ||||| || || Sbjct 931857 CCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTG 931916 Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468 |||||||||||| || || || || ||| | ||||| || Sbjct 931917 TCCGATTACAACATTCAGAAGGAGTCGACATTGCATTTGGT 931957 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||||||||||||||| ||| | ||| || || | Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || || ||| ||||| ||||| | ||| ||||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||| ||||| ||||| || || |||||||||| Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || || || || ||| | ||||| || Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGT 933564 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||||||||||||||| ||| | ||| || || | Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || || ||| ||||| ||||| | ||| ||||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||| ||||| ||||| ||| || |||||||||| Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 106440 ATACAAAAAGA 106450 || || || || Sbjct 932157 ATTCAGAAGGA 932167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| |||||||| | || || || ||||||||||| || || || ||| |||| || Sbjct 939427 TTTTAAAATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGA 939486 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 || |||| || ||| | || ||| |||||| || |||||||| || || Sbjct 939487 GCCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACC 939546 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGC 106430 ||||||||| | | || | ||| |||||||| |||||| || | | ||| | | Sbjct 939547 AGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCT--CC 939604 Query 106431 GATTACAACATACAAAAAGAATCTACACTACATTTAGTATT 106471 || |||||||| || |||||||| || || ||||| || || Sbjct 939605 GACTACAACATTCAGAAAGAATCGACGCTCCATTTGGTTTT 939645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||||||||||||||| ||| | ||| || || | Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || |||||| ||||| ||||| | ||| ||||| Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | |||| ||| || || ||||| ||||| || || ||||||||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || || || || ||| | ||||| || Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGT 933792 >seq15 Length=3179940 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 106236 TTTGTCATTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACC 106295 ||| | | || | ||| | |||||||||||||||| |||||||| | |||||||| || Sbjct 2518839 TTTCTTAATTTTTAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACT 2518898 Query 106296 ATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGAC 106355 ||||| ||||| || || ||| || ||| | || || |||||| || Sbjct 2518899 ATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGAT 2518958 Query 106356 AAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT 106415 ||||||||| | || ||||||||| | | |||| || ||||||||||| |||||| Sbjct 2518959 AAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 2519018 Query 106416 TCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 || | ||| || ||||||||||| || || ||| | || || ||| Sbjct 2519019 GGACGCACGTTATCCGACTATAACATACAAAAGGAGTCGACATTGCACTTGGTA 2519072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402318788020640