Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq19 140 3e-28 >seq19 Length=2240402 Score = 140 bits (154), Expect = 3e-28 Identities = 149/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| || | ||| || ||| | || |||| ||| || || ||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG-T 35664 ||||| ||||||||||| | ||||| | |||||||| ||| ||||| || | | | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGTTTTAACGTT 939734 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || ||||||||||||| ||||||||||| || ||||||||||| || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 35725 AAATATCTGCATTC 35738 |||||| ||||||| Sbjct 939673 AAATATTTGCATTC 939660 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||||||||| || | ||| |||||||| |||||||| || | ||| || ||| | || Sbjct 941636 CAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATC 941577 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| || || ||||| ||||| ||||||||||| | ||||| | |||||||| Sbjct 941576 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 941517 Query 35644 CATGATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 ||| |||||||| | | || | | || || ||||||||||||| ||||||| Sbjct 941516 TTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCG 941458 Query 35703 TTTTACCCGTCAAAGTTTT 35721 |||| || ||||||||||| Sbjct 941457 TTTTTCCGGTCAAAGTTTT 941439 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || |||||| |||||||||||||||| |||||| || |||| ||| Sbjct 931957 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 931898 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||| || ||||| ||||| || ||||| || | |||| | ||||| | | || Sbjct 931897 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTAT-CTTG 931839 Query 35648 ATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| || || | | || | | || || | ||| || |||| || || ||||| Sbjct 931838 AATTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTT 931779 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || || ||||||||||| || |||||| Sbjct 931778 GCCAGTTAATGTTTTCACAAAGATTTGCATT 931748 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || |||||| |||||||||||||||| |||||| || |||| ||| Sbjct 933564 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 933505 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||| || ||||| ||||| || ||||| || | |||| | |||||||| Sbjct 933504 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 933445 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | || | | |||||| | || || || | ||||| || || Sbjct 933444 ATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTG 933385 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| ||||| ||||| || ||||| Sbjct 933384 CCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||||| ||| || || |||| |||| ||||| || ||||| Sbjct 932168 CTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAA 932109 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || ||||| || | |||| | |||||||| ||||| ||| | | Sbjct 932108 AATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTT 932049 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | || || || | ||||| || || || ||||| ||||| || Sbjct 932048 TTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGAC 931989 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 931988 AAAAATTTGCAT 931977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781175001400