Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq145 239 5e-58 seq19 147 2e-30 seq15 136 4e-27 >seq145 Length=640502 Score = 239 bits (264), Expect = 5e-58 Identities = 1175/1847 (64%), Gaps = 46/1847 (2%) Strand=Plus/Minus Query 7494 TTATTTTGCCGTAAAAACTTTAAAAAACGGC--TACTTGTTGAAAATCAACGGCGAATGC 7551 || ||||| | | ||||||||| || ||| |||||||| || || || || || Sbjct 133150 TTTTTTTGGCTTTAAAACTTTAGAA--CGGTCTTACTTGTTAAAGATTAATGGGAAAATT 133093 Query 7552 GCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATT 7611 | ||| ||| ||||| ||| | |||| || || | |||||||||||||| |||||| Sbjct 133092 GTGGAGCGACCACAACATATGTTAATGCGTGTCGCTATTGGCATTCACGGCGATGACATT 133033 Query 7612 GACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCC 7671 || || || | ||||| || | | ||||| | | ||||| || ||||| || Sbjct 133032 GAAGCGGCTATTGAAACTTATAATCTCATGTCGGGGCGTTACTTTACTCATGCTTCCCCA 132973 Query 7672 ACCATGTTTGCCGCGGGCACAA-ACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCAT 7730 || | |||| || | || | |||| || |||||||| || || || |||||||| || Sbjct 132972 ACTTTATTTGGTGCTGCTACCATACGC-CCACAATTGTCGTCCTGCTTCTTGCTAACTAT 132914 Query 7731 GCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAA 7790 || |||||| | | || || ||| || | | | | || || || ||||| || Sbjct 132913 GCCAGAAGACTCCGTTGATGGTATTATGAAGGCTGTAGACCAATGTGCTAAAATTTCTAA 132854 Query 7791 ATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCG--CATC 7848 | | ||| ||||||||||| || | | | | || || || || | |||| Sbjct 132853 GTCGGCCGGTGGAATAGGTCTAAATATTCATTGCATACGAGCAAAAGGGACTAAGACATC 132794 Query 7849 GTGTCCACCAACGGAAAAGCCAG-CGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGC 7907 || | | || | | | | |||| | | || |||||||| ||||||| || | Sbjct 132793 TGGT--AATAGCG-ATGTGTCTGACGGTCTTGTTCCTATGTTGCGTTTGTTCAACAATGT 132737 Query 7908 GGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGA 7964 | || |||| ||||| || || ||| || || || ||| || || || || Sbjct 132736 TGCCCGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGA 132677 Query 7965 GCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA 8024 ||| |||||||| || |||| || | | |||||| || || | |||| || || Sbjct 132676 GCCTTGGCACGCAGATATTTTCGAATTTCTAAATTTGAAAAAAAATACGGGTAAAGAGGA 132617 Query 8025 CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || || || |||| | | ||||| | || |||||||| |||| | || Sbjct 132616 GGATCGTGCACGGGACTTATTTTATGCTCTGTGGATACCGGATCTGTTCATGAAAAGAGT 132557 Query 8085 TCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGT 8144 | || | || ||||| || ||||||||| || |||||| || || | || Sbjct 132556 GGAGGCTGATGAGCATTGGTCTCTAATGTGCCCCCATAAATGCCCTGGCTTGGAAGAAGT 132497 Query 8145 TTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGC---GCGTACGT 8201 ||| || |||||||| ||||||||| | |||| ||| |||| || ||| || Sbjct 132496 TTATGGAGACAAATTTGACAAATTGTACATAAAATATGAAGACGAGGGTAAAGCGAACAA 132437 Query 8202 GCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAA-ACCG 8260 ||| | |||| || ||| || ||| || || | | | || | | |||| Sbjct 132436 AA--CAA-TACAAGCTCGTGACTTGTGGTTCGCAAT-ATGCAGCGCCCAAGTGGAGACCG 132381 Query 8261 GTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGG 8320 | | || |||||||| |||||||||||||| ||| |||||| |||||| || || | Sbjct 132380 GAACTCCTTACATGCTTTACAAAGACGCTTGTAACCGCAAAAGTAATCAACAGAATGTTG 132321 Query 8321 GCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAG 8380 |||| || ||||| || |||| | ||||| || | || | || | || ||| Sbjct 132320 GCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATACGTCGGCTGAAGAAA 132261 Query 8381 TGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACA 8440 | || ||||||||||| || || | || || |||||| | || | ||||| Sbjct 132260 TAGCAGTTTGCAATCTGGCATCAATTGCGTTGAATATGTTCGT--AACGGCAGATAAACA 132203 Query 8441 CTTACGACTTTGAACAATTGAAAAACGCCGTGCAAG--TGACGGTACGCAATTTAGATCG 8498 | | || ||| | || | ||| | | ||||| | | | | || | | Sbjct 132202 AT-ATGATTTTCACAAACTCAAAGAAGT--TGCAAAGCTTATAACAAGGAACCTCAACAA 132146 Query 8499 CATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAG 8558 || || |||||||||| ||||| || ||||| | ||| || | || || | Sbjct 132145 AATAATCGATGTCAATTACTATCCGCTGCCGGAAGCCAGAAAATCTAATTTACGTCATCG 132086 Query 8559 ACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTA 8618 || | || | ||||| ||||| | || ||||| | | |||| ||||| Sbjct 132085 TCCAATCGGTATAGGCGTCCAAGGATTTGCTGACGCACTAATTTTAATGCGTTATCCCTA 132026 Query 8619 CGAAAGCCAAGAAGCGCGCATGCTCAACATAAA--AATAGCGGAAACGGTGTATTACGGC 8676 ||||||| || | || || ||| || ||||| ||| ||||| | |||||||| Sbjct 132025 CGAAAGCGAAAATGCTGGCC-GCTTAA-ATAAACAAATTTTTGAAACAATATATTACGGT 131968 Query 8677 GCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGC 8736 || ||||||||||| |||||| | ||| | ||| || |||||||| | || | || Sbjct 131967 GCCTTAGAAGCCAGTTGTCAATTGGCCAAACAATACGGTCCGTACGAAACATATGAAGGT 131908 Query 8737 AGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTG 8796 || || | || || || | ||||| || |||||| || ||||| || | | Sbjct 131907 AGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGATAAAACGCCTACTGATCTA 131848 Query 8797 TGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTG 8856 ||||||||| || | | ||| | | ||| | | || |||||||||| || || Sbjct 131847 TGGAATTGGTCCGCTCTTAAAGACGACATTAAAAATTATGGAGTGCGCAATTCTTTGCTG 131788 Query 8857 GTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAG 8916 || ||| ||||| ||||| | ||||||||||| | || |||||||| || |||||| Sbjct 131787 GTAGCTCCAATGCCTACCGCGTCTACTGCTCAAATTCTTGGTAACAACGAGTCTTTTGAG 131728 Query 8917 CCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAAT 8976 || | ||| || | ||| |||| || || | || || ||| | | | ||| Sbjct 131727 CCATACACTTCAAATATTTACACACGACGCGTACTGTCTGGTGAGTTTATCGTAGTCAAT 131668 Query 8977 CGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATGCGCGATGCC 9036 | |||||| | || |||| ||| |||| ||| | || || ||| | Sbjct 131667 CATCATTTACTTAAAGATTTGACTGAATTGGGCCTTTGGAATGATAACATGAAAAACTTA 131608 Query 9037 ATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAG 9096 || ||| | |||| | || |||||||| || | ||| || ||||| Sbjct 131607 ATATTGGCACATCGCGGCTCAATACAAAACATTGATGCCATACCTGCCAGTATAAAAGAA 131548 Query 9097 CTGTATAAAACCGTTTGGGAAA------TGAAGCAAAGCACGCTGATCGGCATGGCTGCG 9150 |||||||||| |||||||||| ||||| || | ||| |||||||| Sbjct 131547 TTGTATAAAACGGTTTGGGAAATTTCGGTGAAGTCAACC------ATCAACATGGCTGTT 131494 Query 9151 GATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACT 9210 ||| | ||||||||||| || || |||||||| ||||| | |||||| | ||| | | Sbjct 131493 GATCGCGGCGCTTTTATCGACCAAAGTCAATCATTTAATATACACGTAGCTGAACCTAGT 131434 Query 9211 TACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATG 9270 || | | | || || |||| || ||||| | || |||||||| || ||| Sbjct 131433 TATGGTAAATTATCTTCTATACATTTTTATGGTTGGAGAGCCGGCTTAAAAACCGGTATG 131374 Query 9271 TACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317 || ||| | | || || || || || | || || | |||||||| Sbjct 131373 TATTATCTAAGAACGAAGCCAGCAGCAAATCCCATACAGTTTACAGT 131327 >seq19 Length=2240402 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | ||| |||||||| | ||| || || ||||||||||| ||||||||||| | | Sbjct 941650 CCTCCGCGGAGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGAC 941591 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || | ||||||||| ||||| |||||||||||||| || || || Sbjct 941590 AATG-TGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 941532 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| |||||| ||| || || | || || || |||||||| Sbjct 941531 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCAC 941472 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698 || | ||| || ||||| ||||| |||||||| Sbjct 941471 CTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 138 bits (152), Expect = 1e-27 Identities = 150/194 (77%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 |||||||| ||||||||||| | ||| | || | || || | ||||||||| ||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATG-TGCGCCCATCTTCCAACTGTTTGCCAGCAAA 939794 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 |||||||||||||| || || || || ||||| || ||||| | ||||||||| | || Sbjct 939793 GATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGA-TTTTTGTTTTAACGT 939735 Query 134642 GTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 | | || || || || |||||||| || | ||| || ||||| ||||| |||||||| | Sbjct 939734 TTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGA 939675 Query 134701 CGAAAATTTGCATT 134714 | || ||||||||| Sbjct 939674 CAAATATTTGCATT 939661 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| ||||||||||| ||| | |||| | ||| || | || ||||| Sbjct 931945 GTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 931886 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 |||||||||||||| |||||||| || || || ||||| || ||||||||||| ||| Sbjct 931885 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCTTTA 931826 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | || || || | ||| || || | |||||| ||||| || ||||| ||| Sbjct 931825 ACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTT 931766 Query 134697 TTAACGAAAATTTGCATTTT 134716 || || || ||||||||||| Sbjct 931765 TTCACAAAGATTTGCATTTT 931746 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| ||||||||||| ||| | |||| | ||| || | || ||||| Sbjct 933552 GTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 933493 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 |||||||||||||| |||||||| || || || ||||| || |||||||| || ||| Sbjct 933492 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTG 933433 Query 134637 ACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || | | |||| |||||||| | || || || | || ||||| || || || || || Sbjct 933432 AC-GTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGT 933374 Query 134696 TTTAACGAAAATTTGCAT 134713 ||| || ||||||||||| Sbjct 933373 TTTGACAAAAATTTGCAT 933356 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| ||||| ||||| ||| | |||| | ||| || | || || || Sbjct 933780 GTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAATTGCTTACCG 933721 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||||||||||||||||||||| || || || ||||| || || |||||||| ||| Sbjct 933720 GCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATTTTAGCCTTG 933661 Query 134637 ACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || | | ||||| ||||||| | || || || || || ||||| || || || || || Sbjct 933660 AC-GTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGT 933602 Query 134696 TTTAACGAAAATTTGCAT 134713 ||| || ||||||||||| Sbjct 933601 TTTGACAAAAATTTGCAT 933584 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 ||||| ||||||||||| ||| | ||| | ||| || | || ||||| |||||| Sbjct 932167 TCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAA 932108 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||||||| |||||||| || || || ||||| || |||||||| || ||||| | Sbjct 932107 ATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGAC-GTT 932049 Query 134643 TCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 | |||| |||||||| | || || || | || ||||| || || || || ||||| || Sbjct 932048 TTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGAC 931989 Query 134702 GAAAATTTGCAT 134713 ||||||||||| Sbjct 931988 AAAAATTTGCAT 931977 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || || || | || ||||| ||||| || ||||||||||||||| Sbjct 939662 TTCCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGG 939603 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | | || | ||||||||| ||||| |||||||| || ||||| || | Sbjct 939602 AGAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 939543 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | | |||||||| ||||||||||| ||| || || | || ||||| | || | Sbjct 939542 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 939483 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | || || ||||| || || || || || ||||| | |||||||| Sbjct 939482 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATTTT 939431 >seq15 Length=3179940 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || |||||||| ||||| |||||| | ||| | || || | |||||||| Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || ||||||||||| || ||||| || || ||||||||||| || |||||||| ||| Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | |||||||| | || || || | |||||| ||||| || || | |||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 134697 TTAACGAAAATTTGCATTTT 134716 |||||||||||||||||||| Sbjct 2518879 TTAACGAAAATTTGCATTTT 2518860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505384469956600