Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq145 538 5e-148 seq234 291 1e-73 seq132 116 5e-21 >seq145 Length=640502 Score = 538 bits (596), Expect = 5e-148 Identities = 1501/2275 (66%), Gaps = 42/2275 (2%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | ||||||||| ||||| | ||| || || || | |||||| ||||||||| Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| | || ||||| || || ||||| ||| | || ||| |||||| || Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || |||| || ||||| | ||||||||||| ||||| ||||| || | ||| | ||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 || || || | ||| | ||||||||||| || ||| | | | ||| ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTG 131560 Query 68605 TCTGG-AAGGC-TC-GTATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 | || | ||| || | ||||| || || || | || | | |||| || || || Sbjct 131561 GCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATG 131620 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 | ||||||||| | || || ||| || |||| | ||| |||| |||| | Sbjct 131621 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTACGATA 131680 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 || || ||||| | || | || ||||||||||| || ||||| || | ||| || Sbjct 131681 AACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGACTCG 131740 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 || || || |||||||||||||| || || || ||||| || || |||| ||| ||| Sbjct 131741 TTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGAATTG 131800 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGT 68901 | | |||| || | || | ||||| ||| ||||| ||| ||||||| || Sbjct 131801 CGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGTAGGC 131860 Query 68902 ACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT---TGCA-TATGATCCATTATA 68957 || ||| | ||| ||||| || || || ||||| || | || || | ||| Sbjct 131861 GTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTA----CCTTCATA 131916 Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATA 69017 |||||| || || || | |||| || | || |||||| || ||||| ||||||||||| Sbjct 131917 TGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATA 131976 Query 69018 AATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATG 69077 |||||||| ||||| | ||||| | || | | || ||| | |||||| | Sbjct 131977 TATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGGGATAACG 132036 Query 69078 TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 | | ||| | ||| || || ||||| || || || |||||||| || | ||| | Sbjct 132037 CATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAA 132096 Query 69138 ATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| || || ||||| || | ||||| ||||| | ||| || ||||| || || || Sbjct 132097 ATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAGGTT 132156 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCT---AT 69254 | || | || | || || || |||||| |||||||| || || |||| | Sbjct 132157 CCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGCCGT 132216 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 || |||||||||| || | ||||| ||||| |||||||||| || | || | Sbjct 132217 TACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACGT 132276 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| | || |||||||| | ||||| ||||| ||||| || | ||| || ||||| Sbjct 132277 ATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATT 132336 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| || |||||| ||||| |||||||| || | ||||| || || || | || | Sbjct 132337 ACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTGGGC 132396 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT----CT 69490 | || | ||| | | | | ||| | |||| || |||| ||||| || Sbjct 132397 GCTGCATATTGCGAACCACAAGTCACGAGCTTGTATT---GTTTTGT-TCGCTTTACCCT 132452 Query 69491 CTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 | | |||||||| | | || | || |||| ||||| |||| || ||||| |||| Sbjct 132453 CGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGCCAG 132512 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | |||| || || ||||| | ||||| |||||| ||| |||| |||||| || | Sbjct 132513 GGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGAACA 132572 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 |||| || ||||| ||||| ||| | || | | | || || || || || |||| Sbjct 132573 GATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCGTAT 132632 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 ||||||| | || ||||| || | |||||| | ||||| || |||| ||||| || | Sbjct 132633 TTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAA 132692 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | ||||| ||||| || || || || | || | |||| || || | | | Sbjct 132693 AAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAAAC 132752 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 || ||| |||| || ||| | ||| | | | | ||||| | | | | ||| ||| Sbjct 132753 GCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTTTTG 132812 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA-A 69909 | || || | |||| |||||||||||| || ||| ||||| ||| |||||| Sbjct 132813 CTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCACATT 132872 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACA 69968 || | | ||||| ||||| || | | || ||| ||| |||| ||| || || Sbjct 132873 GGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAG-AAGCA 132930 Query 69969 GCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 | |||| ||| | |||| || | ||| |||||| || || || || ||||| || Sbjct 132931 GGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAA 132990 Query 70029 CCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAA 70087 | | || | ||||| || ||||||||||| | ||| || || | | | |||| Sbjct 132991 GTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCATCGCCG-TGAA 133049 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 | || || ||||||||||| |||||||| || ||||| || || |||| ||| || | Sbjct 133050 TGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCT 133109 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 | |||| ||| || ||| | ||||||||| |||||| | || || ||| || | | Sbjct 133110 TTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGCGAT 133169 Query 70208 CGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAG-TA 70266 | ||||||||| ||||||| | | ||| || || | || | | ||| | | Sbjct 133170 CATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAACCT-TGTAATGGAAA 133228 Query 70267 GGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCC 70326 || ||||| || || | ||||| || ||| || ||||||| Sbjct 133229 TCCGATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAATCAGTT 133282 Query 70327 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCT 70386 || || ||| |||| ||| |||||||| || || || ||||| | || || | || Sbjct 133283 ATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATACGTGCG 133342 Query 70387 GCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAA 70445 |||| ||||||||||| || || | || || || | | || || |||| |||||||| Sbjct 133343 GCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGCAGCTAA 133401 Query 70446 CGTATCTAATTCTATAGTTGTAACTCCGTTATA-TAGCCCTTGAATAACTTTCATGGCTA 70504 |||| |||||| || ||||| ||| || |||| | | | ||||| | | | Sbjct 133402 ATTATCCAATTCTTGTGTAGTAACGCCGCAGTACAAGCCGCTTACT-ACTTTTAAAGTAA 133460 Query 70505 TTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGATG 70564 | | | ||||| | ||| || | || |||| ||| || || ||| || | | | Sbjct 133461 TGGCGGTTGGATCAACGAAATCCATATTAAGACTATAGCACAACTTTTGGATCCTGAAAG 133520 Query 70565 TAATTTTATC-AAACATAACATTCTCCTTATTTCCACTTCGTTTAATGACGTACA 70618 | |||||||| ||| | |||| |||||| ||| |||||| | ||| ||| Sbjct 133521 TTATTTTATCGAAATGGACCATT-TCCTTACGACCATCTCGTTTCACCACGAACA 133574 >seq234 Length=462357 Score = 291 bits (322), Expect = 1e-73 Identities = 505/729 (69%), Gaps = 19/729 (3%) Strand=Plus/Minus Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || |||||| | | ||| | ||| |||||| ||||||| ||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || || | | ||||||| ||||| || | |||||||||||| || | ||| Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 39551 GCCTCTGTTATTATCGATGTTACTA---CC--TCATCACTCGGTGGATGCAATAAATGTT 39605 || ||||||||||| || | | || || | ||||||| || | ||||||| Sbjct 280830 GCATCTGTTATTAT-----TTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTT 280776 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 |||||||||| || || ||||| || | ||| ||||| | || | ||| |||| Sbjct 280775 TAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAG 280716 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 | ||||| | || ||||||| ||||| || || ||||||||||| | ||| || | Sbjct 280715 AGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGC 280656 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785 || |||||| || ||||| || || || || || | | | ||| || || | | Sbjct 280655 CACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCG 280596 Query 39786 CATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 || ||| |||||| | ||||| || || |||||||| || | |||||||| | Sbjct 280595 AATGCGATGATATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCT 280536 Query 39843 CTATAGCATTAAAGAGATAAT---GTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899 | || |||||||| ||||| | ||| || ||| || | | |||||| || || | Sbjct 280535 CAATGGCATTAAATAGATATTCACGTTCTTTTTCA---TCCATGATATATGTTTCGATAA 280479 Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATC 39959 | |||||||||||| || || | ||||| || || || ||||| || ||||| || | Sbjct 280478 GTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAAC 280419 Query 39960 TTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTC 40019 ||||| || ||||| |||||| |||||| |||| | ||||| ||||| || || | Sbjct 280418 GAGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATAC 280359 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 |||| || |||||||| ||||| |||||| |||||||| ||| || | | Sbjct 280358 CATCGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTA 280299 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 | |||||| || | || ||||| || | ||| || || ||||| |||||||| || | Sbjct 280298 ACCGATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGG 280239 Query 40140 CCTCTGCCT 40148 | || |||| Sbjct 280238 CTTCCGCCT 280230 >seq132 Length=759884 Score = 116 bits (128), Expect = 5e-21 Identities = 335/506 (66%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 70048 TTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCAT 70106 ||||| ||||||||||||| || || || ||| | ||||| || || || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 |||||||| || ||||| || || |||| ||| || ||||||| ||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 | |||||| || |||||| | ||||| ||| || | || |||||||| | ||||| Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 70227 TAGTTTATCCTTATATTTGGTAACTATATCCATAACAGT-AGGTGAGATAATCGGAGATC 70285 || ||| || | | || | | ||| || | || |||| || || Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAACCT-TGTAATGGTAATCCGATATAACAGGGGAAT 238 Query 70286 GTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtt 70345 | ||||| | || | | | || || ||| || || ||| |||| || Sbjct 239 GAAGGCCATTAT----CTTCATTTTGATG--TAGATCAGTTATCACTTCAGAGAATACTT 292 Query 70346 tttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAG 70405 | |||||||| || || || ||||||| || || | || |||| |||||||||||| | Sbjct 293 TCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTCTG 352 Query 70406 GATGTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 | || | || || || | | || || |||| |||||||| |||| |||||| || Sbjct 353 GGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCGTG 411 Query 70465 GTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAAT 70524 || || ||| || | ||| | ||||||| | || | | ||||| | ||| Sbjct 412 GTGACGCCGCAGTACAACCCGCTTACTACTTTCAAAGTAATGGCGGTCGGATCAACGAAA 471 Query 70525 TCTGTGTTCAGACCATAACATAATTT 70550 || | || |||||||| ||||| || Sbjct 472 TCCATATTAAGACCATAGCATAACTT 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686889867076200