Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq135 113 4e-20 >seq135 Length=742707 Score = 113 bits (124), Expect = 4e-20 Identities = 557/880 (63%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 68773 TGATGGTGACGAACAATTGGCTCTTAACATTGCGCATGAAATGATTTCACAAACCTATCA 68832 || ||| ||||| ||| ||| || ||| | | ||||| |||| || | ||| Sbjct 587708 TGGTGGAAACGAATTATTTGCTACAAATATTATGAAAGAAATACTTTCTGGAAGATTTCA 587649 Query 68833 ACCTGCAACACCAACATTCTCTAATGCTGGTAAGTTGCGTGGTGGTAATGCTGTATCATG 68892 ||| || || ||||| || | ||| |||||| | |||| | | ||||||| Sbjct 587648 ACCGGCCACTCCAACTTTTTTAAATTGTGGTAAAAAACAACGTGGAGAATATATATCATG 587589 Query 68893 TTTCCTTTTGAATATTGAAGATAATATGACGTCTATTGGGCGCTCAGTAAATTCAGTTCT 68952 ||| | || ||| |||||||||||| |||||||| || || ||||| ||| | | Sbjct 587588 TTTTTTATTACGTATAGAAGATAATATGGAATCTATTGGACGTGCAATAAATGCAGCTTT 587529 Query 68953 TCAATTGTCTAAAATGGGTGGTGGAGTTGGAATCAACTTAACTGATATCCGTCCGTCAGG 69012 || | || |||| || || ||||| | | ||||| || | | |||||| Sbjct 587528 ACAGCTTTCCAAAAGAGGCGGAGGAGTATCATTTTTATTAACAAATTTAAGAGAGTCAGG 587469 Query 69013 AGACCCTATCAAGGGTATTGAGAATATGGCTGATGGAGTTGTTCCAATCATGAAACT-CT 69071 || || || || |||| | ||| || |||| || | ||| |||||||| | || Sbjct 587468 AGCTCCCATTAAATATATTAAAAATCAATCTTCTGGAATTATACCAGTCATGAAAATGCT 587409 Query 69072 ATGAAGATTCATTTTCATATGCCAATCAGTTGGGGACAAGAAATGGGGCAGGAGTAACTT 69131 | |||||| | || || || || ||||| || || | || | || || |||| | Sbjct 587408 A-GAAGATGCTTTCTCTTACGCAAATCAATTAGGTGCTCGACAAGGAGCTGGAGCTGTAT 587350 Query 69132 ATCTCAATGTATTCCATAAAGATATTGTTAAATTCCTCTCTACaaaaaaaGAAAATGCTG 69191 || | ||| ||| |||||| | ||||| | || |||||||||||||| | Sbjct 587349 ATTTGCATGCTCATCATCCTGATATTTTAAAATTTTTAGACACTAAAAAAGAAAATGCCG 587290 Query 69192 ACGAAAAAGTTCGTGTTAAAACTCTTTCTCTCGGTGTTGTAGTTCCTGATAAATTCTATG 69251 | |||||| || | | |||||| | ||| | |||||| | |||||||| | | || | Sbjct 587289 ATGAAAAAATTAGAATAAAAACTTTATCTTTAGGTGTTATTATTCCTGAT-ATTACTTTT 587231 Query 69252 AACTCATTGCTAAAG---GTGAATCAATGTATTTGTTTAGCCCTTATGATATCTACAATG 69308 | | | || |||| | | ||||| ||| ||| || || ||||| | || | Sbjct 587230 CAAT--TAGCAAAAGAAAATAAGGAAATGTGTTTATTTTCTCCATACGATATTGAAAAAG 587173 Query 69309 AGTATGGAAAACTAATGTCTGAAATCAACATCACAGAAATGTATGATGAATTAGTTGAAA 69368 ||| | ||| | | || ||| | || | ||| | ||| || | ||| | || Sbjct 587172 TTTATCGTCAACCATTTTCAGAATTAGTTATTAGTGAACTTTATCATAATTTATTAAAAG 587113 Query 69369 ACAAAAATATCAAGAAAGATAAAATCTTTGCTCGTGACCTTGAAGAAGAAATGTCTAAAC 69428 | ||| || || ||| | || ||| ||| | || || || | || | Sbjct 587112 ATAAACGAATTAAAAAAACTGCTATTAATGCACGTAATTTTTTTCAAAAATTAGCTGA-- 587055 Query 69429 TTATTCAA---GAATCAGGATATCCATACATCATCAACATTGATACAGCAAACCAAGAAA 69485 |||||| ||||| || |||||||| || || ||||| | ||||| | Sbjct 587054 -GATTCAATTTGAATCTGGGTATCCATATATTATGTTTGAAGATACTGTAAACCGTACTA 586996 Query 69486 ATGCTGTTGACGGTGTAATTAAAATGTCTAACCTTTGTTCTGAAATCCTTCAAGTACAAT 69545 || || || || ||||| ||| ||| | ||||||||||| || |||||| | Sbjct 586995 ATCCTATTTCTGGACATATTAACATGAGTAATTTATGTTCTGAAATTCTGCAAGTAAATA 586936 Query 69546 CTCCATCAGAATTGAACTCAGACCAAACTTATAAGACTATTGGAACTGACGTATCATGTA 69605 ||| ||||||| ||| |||| || |||||| | || ||||| || |||| |||| Sbjct 586935 ATCCTTCAGAATATAACGAAGACTTAAGTTATAAAAAAATAGGAACAGATATATCTTGTA 586876 Query 69606 ACCTTGGTTCAACTAATATTACACATCTTATGGAGTCATC 69645 | | || || |||||| | || |||||| || || Sbjct 586875 ATTTAGGATCTTTAAATATTGCTAATACTATGGAATCTTC 586836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415889623315845