Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq234 203 3e-47 seq1 138 9e-28 seq42 127 2e-24 >seq234 Length=462357 Score = 203 bits (224), Expect = 3e-47 Identities = 486/725 (67%), Gaps = 24/725 (3%) Strand=Plus/Plus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| || || || |||||| | |||||||| | | |||||| | Sbjct 280238 GCCTCTTTTTGGACTGCTGAGGAGGTTGATCTCTCTAAAGACATGGACGATTGGAATCGG 280297 Query 43817 TTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 |||| | || ||| |||||||| || |||||||| |||||||| || ||| Sbjct 280298 TTAAG-CGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGGCATCCGA 280356 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC 43935 || || || ||||| ||||| || || ||| | ||||| |||||| || | ||||| Sbjct 280357 TGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACCGAAGC 280416 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 || || |||||||| |||||||||||||| |||||| | || ||||||||||| ||| | Sbjct 280417 TCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGTATAGTTT 280476 Query 43996 TCTGATAGATACGTACATCAAAGATG----GGCACGAGAAGCATCGATTGTTTAATGCGA 44051 || || || || || |||| |||| | ||| ||| ||| | |||||||| | Sbjct 280477 ACTTATCGAAACATATATCATGGATGAAAAAGAACGTGAA-TATC---TATTTAATGCCA 280532 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 | || ||| | || | |||| | || || || ||||| || |||||| || Sbjct 280533 TTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGATATCATCGC 280592 Query 44112 AT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 || | | |||||| || || | | || || || | || ||||| || |||||| Sbjct 280593 ATTCGGCTAATTTTGGTGAGCGTGTAATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTA 280652 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 || || || | ||||||||| |||||||||| || | ||||| || || || | Sbjct 280653 GTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACAT 280712 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || ||||| | ||| || ||||||||||| || || || ||||| || | Sbjct 280713 TCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTAATGT 280772 Query 44289 TTGGATATCTAGGAGACGATAAGC-CTTCATGTAAGACAATTACAGATATTGTTGTAGAG 44347 || | || | || || | || | | | | | | ||| || || | ||| Sbjct 280773 TTAAACATTT--GATACAAAAACCGAGTAAAGAACG--GATTTTGGAAATAATAACAGAT 280828 Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407 || || || || ||| |||| ||| ||||| || ||||| || | ||||| || ||| Sbjct 280829 GCCGTTAAAATTGAAAAAGAGTTTTTGACAGAGGCCTTACCAGTCGACTTAATTGGCATG 280888 Query 44408 AA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 || ||| | ||| | ||||||| ||||| |||| |||||||| || || ||| Sbjct 280889 AACAGCGAAAGT---ATGTGCAAATATATAGAATATGTTGCCGATCGTTTGCTATTAGAA 280945 Query 44465 CTGGG 44469 |||| Sbjct 280946 TTGGG 280950 >seq1 Length=5869143 Score = 138 bits (152), Expect = 9e-28 Identities = 508/782 (65%), Gaps = 24/782 (3%) Strand=Plus/Plus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGA-AATCAGTTTCCGTTGCTAACTAC 40708 || |||||||| ||| | | | |||| || || ||||| || ||||| |||| || Sbjct 1470072 TCTATATTTGGTGCTCAGATGCGGTTCAATATGCGAGAATCA-TTCCCGTTATTAACAAC 1470130 Query 40709 aaaaaaaaTGTTTTGGAAAGGCATTGCA-GAAGAACTGTTATGGTTTATCAAAGGTTGTA 40767 ||||||| |||| ||| | || || |||||||| | |||||||| | || | | Sbjct 1470131 AAAAAAAGTGTTCTGGCGCG-CAGTGTGTGAAGAACTACTCTGGTTTATAAGCGGCAGCA 1470189 Query 40768 CTAATGCTAAGAAATTATCAGAAAGAGGAG-TGCACATTTGGAATGCGCAC---AGTTCT 40823 || |||| || || ||||| | | | ||||| ||||||| || ||| | Sbjct 1470190 CTGATGCGAAAGTCCTA-CAGAACAAAAACATTCACATCTGGAATGGTAACGCTAGTCGT 1470248 Query 40824 AAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTT 40883 | | |||| ||| || || ||| | || ||||| || || || || || Sbjct 1470249 GAT---TTTTTGGATAGATGCGGGTTCAGTGATCGCGAAGAAGGCGACCTGGGGCCAATT 1470305 Query 40884 TATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA-CTCTGATTATAC 40942 || || ||||| | ||| |||||||| ||| ||||| |||| ||| | | |||| Sbjct 1470306 TACGGTTTTCAATGGCGCCATTTTGGGGCACAATATCGCACT-TGTCGCGATAGTTATGG 1470364 Query 40943 CAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT-----TAAATCCGATCCC 40997 | | ||| | |||||||| || | || || || || ||||||| | || Sbjct 1470365 TACGGAGGGAGTCGATCAATTGAAGCAGATAATTGAGACAATAACTATAAATCCTA--CC 1470422 Query 40998 GATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTG 41057 ||| |||||||| || ||| | | ||||| ||| || ||| ||||| || Sbjct 1470423 GAT---CGACGTATGATTCTGTCCTCTTGGAATCCAGTAGATATACCAAAAATGGCCTTA 1470479 Query 41058 CCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTG 41117 ||||| || |||| || ||||| || || |||| ||| |||||||| ||| | Sbjct 1470480 CCACCCTGCCATTGCTTGGCCCAGTTCTATGTAGCCAATAATGAGCTGTCATGCCAACTT 1470539 Query 41118 TATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTG 41177 ||||| | | || ||||| || || ||||| ||||| ||||| ||||| | Sbjct 1470540 TATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTTAATATAGCATCCTATGCATTA 1470599 Query 41178 CTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA 41237 | |||| |||||||||||| | || | ||||| || || ||||| ||||| Sbjct 1470600 TTAACGTGTATGATTGCACATTTAACTGGCCTTAAACCAGGCGATTTTGTCCACACTACC 1470659 Query 41238 GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAA 41297 || ||| || ||||| | | || || | || || | ||| ||| | ||||| ||| Sbjct 1470660 GGCGATACGCACATTTATAAAACGCATATCCAACCATTGAAAGAGCAATTAACACGCAAA 1470719 Query 41298 CCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGC 41357 || ||||||| | | | || ||||| || || ||||| ||||| ||||| | Sbjct 1470720 CCGCATGCATTTCCTAAATTGATAATAAAACGTGCCGTGGAAAATATTGAGGATTTCAGG 1470779 Query 41358 ATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCT 41417 | |||||| | || || || ||||| || || ||||| || ||||| ||| || Sbjct 1470780 TACTCTGATTTCGAAATTGTGGACTATAATCCCTATCCAAAAATTCAAATGGAAATGGCT 1470839 Query 41418 GT 41419 || Sbjct 1470840 GT 1470841 Score = 136 bits (150), Expect = 3e-27 Identities = 373/567 (66%), Gaps = 12/567 (2%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||| | || ||||| || || || || |||| || ||||| | ||| |||||||| ||| Sbjct 1455506 GATCGCGAAGAAGGCGACCTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCA 1455565 Query 40914 AAATATGACACTATGTA-CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGT 40972 ||||| |||| ||| | | |||| | | ||| | |||||||| || | Sbjct 1455566 CAATATCGCACT-TGTCGCGATAGTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGAT 1455624 Query 40973 TATAGATACGAT-----TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGG 41027 || || || || ||||||| | ||||| |||||||| || ||| | | ||| Sbjct 1455625 AATTGAGACAATAACTATAAATCCTA--CCGAT---CGACGTATGATTCTGTCCTCTTGG 1455679 Query 41028 AACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTAC 41087 || ||| || ||| ||||| || ||||| || |||| || ||||| || Sbjct 1455680 AATCCAGTAGATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTAT 1455739 Query 41088 GTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGG 41147 || |||| ||| |||||||| ||| | ||||| | | || ||||| || || Sbjct 1455740 GTAGCCAATAATGAGCTGTCATGCCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGT 1455799 Query 41148 GTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 ||||| ||||| ||||| ||||| | | |||| |||||||||||| | ||| Sbjct 1455800 GTCCCATTTAATATAGCATCCTATGCATTATTAACGTGTATGATTGCACATTTAACCGGC 1455859 Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATA 41267 | ||||| || || ||||| ||||| || ||| || ||||| | | || || Sbjct 1455860 CTTAAACCAGGCGATTTTGTCCACACTACCGGCGATACGCACATTTATAAAACGCATATC 1455919 Query 41268 GAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAA 41327 | || || | ||| ||| | ||||| ||||| ||||||| | | | || ||| Sbjct 1455920 CAACCATTGAAAGAGCAATTAACACGCAAACCGCATGCATTTCCTAAATTGATAATAAAA 1455979 Query 41328 CGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAAT 41387 || || || ||||| ||||| ||||| | | |||||| | || || || ||| Sbjct 1455980 CGTGCCGTGGAAAATATTGAGGATTTCAGGTACTCTGATTTCGAAATTGTGGACTATAAT 1456039 Query 41388 CCGTACCCTAAAATCCACATGGACATG 41414 || || || ||||| || ||||| ||| Sbjct 1456040 CCCTATCCAAAAATTCAAATGGAAATG 1456066 Score = 136 bits (150), Expect = 3e-27 Identities = 373/567 (66%), Gaps = 12/567 (2%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||| | || ||||| || || || || |||| || ||||| | ||| |||||||| ||| Sbjct 1460044 GATCGCGAAGAAGGCGACCTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCA 1460103 Query 40914 AAATATGACACTATGTA-CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGT 40972 ||||| |||| ||| | | |||| | | ||| | |||||||| || | Sbjct 1460104 CAATATCGCACT-TGTCGCGATAGTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGAT 1460162 Query 40973 TATAGATACGAT-----TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGG 41027 || || || || ||||||| | ||||| |||||||| || ||| | | ||| Sbjct 1460163 AATTGAGACAATAACTATAAATCCTA--CCGAT---CGACGTATGATTCTGTCCTCTTGG 1460217 Query 41028 AACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTAC 41087 || ||| || ||| ||||| || ||||| || |||| || ||||| || Sbjct 1460218 AATCCAGTAGATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTAT 1460277 Query 41088 GTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGG 41147 || |||| ||| |||||||| ||| | ||||| | | || ||||| || || Sbjct 1460278 GTAGCCAATAATGAGCTGTCATGCCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGT 1460337 Query 41148 GTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 ||||| ||||| ||||| ||||| | | |||| |||||||||||| | ||| Sbjct 1460338 GTCCCATTTAATATAGCATCCTATGCATTATTAACGTGTATGATTGCACATTTAACCGGC 1460397 Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATA 41267 | ||||| || || ||||| ||||| || ||| || ||||| | | || || Sbjct 1460398 CTTAAACCAGGCGATTTTGTCCACACTACCGGCGATACGCACATTTATAAAACGCATATC 1460457 Query 41268 GAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAA 41327 | || || | ||| ||| | ||||| ||||| ||||||| | | | || ||| Sbjct 1460458 CAACCATTGAAAGAGCAATTAACACGCAAACCGCATGCATTTCCTAAATTGATAATAAAA 1460517 Query 41328 CGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAAT 41387 || || || ||||| ||||| ||||| | | |||||| | || || || ||| Sbjct 1460518 CGTGCCGTGGAAAATATTGAGGATTTCAGGTACTCTGATTTCGAAATTGTGGACTATAAT 1460577 Query 41388 CCGTACCCTAAAATCCACATGGACATG 41414 || || || ||||| || ||||| ||| Sbjct 1460578 CCCTATCCAAAAATTCAAATGGAAATG 1460604 >seq42 Length=1371130 Score = 127 bits (140), Expect = 2e-24 Identities = 227/330 (69%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| ||||||||||| || |||||| | || | ||| | ||||| || | ||| || Sbjct 631934 GGAGTCCATGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTG 631875 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 |||||||||||||||||||| ||||| ||| | | || | || || || ||| || Sbjct 631874 AATAATATTTTAGTTATTGGTATGACAAATCGCCGTGACATGATTGATGAGGCTTTACTA 631815 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 || ||||| || |||||| | | || ||||| | || || | ||| |||| | || Sbjct 631814 CGTCCCGGCCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTA 631755 Query 19792 GAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGAT 19848 ||||| |||| || || || | ||||| | ||||| || || ||| Sbjct 631754 CAAATTCTAAATATTCACACGAAACGTATGCGTGATTTTAATAAAATT---GCTGGAGAT 631698 Query 19849 GTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGA 19908 || ||| ||||||| || || |||||| || | |||||||| ||| | || || Sbjct 631697 GTGGATACGAAAGAAATCGCTGCCCTTACCAAGAATTTCAGCGGCGCCGAATTGGAAGGC 631638 Query 19909 TTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | || |||||||| | ||| ||| Sbjct 631637 TTAGTACGTGCTGCCCAATCTACTGCTATG 631608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445318991025