Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 6e-12 >seq1 Length=5869143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 281/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Minus Query 31132 CGAGTTAATTGCTCTCGGAGACCTTCGATGTGATTGACATAAATATGCGCATCGCCAATA 31191 || |||||||||||| | || ||| || | |||||| |||| |||||| || Sbjct 1455945 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 1455886 Query 31192 GAGTGTACCAATTCCCCTGGTCTTAGATGGGTCAATTTGGCAATCACATGAACCAAAAGC 31251 | ||| || || || |||||| | || ||| || | ||||||| | || | Sbjct 1455885 GTGTGGACAAAATCGCCTGGTTTAAGGCCGGTTAAATGTGCAATCATACACGTTAATAAT 1455826 Query 31252 GCATAACTCGCTATGTTGAATGGTACACCCAATCCCAAATCGGCAGATCGTTGATATAAC 31311 ||||| ||||| || ||||| ||||||| |||| ||||||| || ||||| | Sbjct 1455825 GCATAGGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1455766 Query 31312 AAACAGGAAAGTTCATCTCCGGTCACGTAAAATTGAAATAACACATGACAAGGCGGCAAA 31371 || || || |||| || || || || || || ||| || || || || Sbjct 1455765 TGGCATGACAGCTCATTATTGGCTACATAGAACTGGGCCAAGCAATGGCAGGGTGGTAAG 1455706 Query 31372 GCCATTTCACAGGTATCGACGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGA 31431 ||||||| |||| || |||||||||| | | | || ||| ||| ||| ||| Sbjct 1455705 GCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAGAATCATACGTCGATCGGTAGGA 1455646 Query 31432 TC-ACGCTTAATCTCTTCTATCA-CGGCTGTTATTTGATCGATTCCTTCACCCGTATAAT 31489 | | ||| | ||| | || | | ||| | | |||||||| ||| || |||| || Sbjct 1455645 TTTATAGTTATTGTCT-CAATTATCTGCT-TCAATTGATCGACTCCCTC---CGTACCAT 1455591 Query 31490 TACTATCACATCCCTTG---TAGGCTGCACCGAAATGTCGCCATTGAAACCCATAAATAG 31546 |||||| | | || || ||| || ||||| ||||||||||| || ||||| | Sbjct 1455590 AACTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAATTG 1455531 Query 31547 GTCCCAGGTC 31556 | |||||||| Sbjct 1455530 GCCCCAGGTC 1455521 Score = 86.0 bits (94), Expect = 6e-12 Identities = 281/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Minus Query 31132 CGAGTTAATTGCTCTCGGAGACCTTCGATGTGATTGACATAAATATGCGCATCGCCAATA 31191 || |||||||||||| | || ||| || | |||||| |||| |||||| || Sbjct 1460483 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 1460424 Query 31192 GAGTGTACCAATTCCCCTGGTCTTAGATGGGTCAATTTGGCAATCACATGAACCAAAAGC 31251 | ||| || || || |||||| | || ||| || | ||||||| | || | Sbjct 1460423 GTGTGGACAAAATCGCCTGGTTTAAGGCCGGTTAAATGTGCAATCATACACGTTAATAAT 1460364 Query 31252 GCATAACTCGCTATGTTGAATGGTACACCCAATCCCAAATCGGCAGATCGTTGATATAAC 31311 ||||| ||||| || ||||| ||||||| |||| ||||||| || ||||| | Sbjct 1460363 GCATAGGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1460304 Query 31312 AAACAGGAAAGTTCATCTCCGGTCACGTAAAATTGAAATAACACATGACAAGGCGGCAAA 31371 || || || |||| || || || || || || ||| || || || || Sbjct 1460303 TGGCATGACAGCTCATTATTGGCTACATAGAACTGGGCCAAGCAATGGCAGGGTGGTAAG 1460244 Query 31372 GCCATTTCACAGGTATCGACGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGA 31431 ||||||| |||| || |||||||||| | | | || ||| ||| ||| ||| Sbjct 1460243 GCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAGAATCATACGTCGATCGGTAGGA 1460184 Query 31432 TC-ACGCTTAATCTCTTCTATCA-CGGCTGTTATTTGATCGATTCCTTCACCCGTATAAT 31489 | | ||| | ||| | || | | ||| | | |||||||| ||| || |||| || Sbjct 1460183 TTTATAGTTATTGTCT-CAATTATCTGCT-TCAATTGATCGACTCCCTC---CGTACCAT 1460129 Query 31490 TACTATCACATCCCTTG---TAGGCTGCACCGAAATGTCGCCATTGAAACCCATAAATAG 31546 |||||| | | || || ||| || ||||| ||||||||||| || ||||| | Sbjct 1460128 AACTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAATTG 1460069 Query 31547 GTCCCAGGTC 31556 | |||||||| Sbjct 1460068 GCCCCAGGTC 1460059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 280/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Minus Query 31132 CGAGTTAATTGCTCTCGGAGACCTTCGATGTGATTGACATAAATATGCGCATCGCCAATA 31191 || |||||||||||| | || ||| || | |||||| |||| |||||| || Sbjct 1470715 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 1470656 Query 31192 GAGTGTACCAATTCCCCTGGTCTTAGATGGGTCAATTTGGCAATCACATGAACCAAAAGC 31251 | ||| || || || |||||| | || || || | ||||||| | || | Sbjct 1470655 GTGTGGACAAAATCGCCTGGTTTAAGGCCAGTTAAATGTGCAATCATACACGTTAATAAT 1470596 Query 31252 GCATAACTCGCTATGTTGAATGGTACACCCAATCCCAAATCGGCAGATCGTTGATATAAC 31311 ||||| ||||| || ||||| ||||||| |||| ||||||| || ||||| | Sbjct 1470595 GCATAGGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1470536 Query 31312 AAACAGGAAAGTTCATCTCCGGTCACGTAAAATTGAAATAACACATGACAAGGCGGCAAA 31371 || || || |||| || || || || || || ||| || || || || Sbjct 1470535 TGGCATGACAGCTCATTATTGGCTACATAGAACTGGGCCAAGCAATGGCAGGGTGGTAAG 1470476 Query 31372 GCCATTTCACAGGTATCGACGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGA 31431 ||||||| |||| || |||||||||| | | | || ||| ||| ||| ||| Sbjct 1470475 GCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAGAATCATACGTCGATCGGTAGGA 1470416 Query 31432 TC-ACGCTTAATCTCTTCTATCA-CGGCTGTTATTTGATCGATTCCTTCACCCGTATAAT 31489 | | ||| | ||| | || | | ||| | | |||||||| ||| || |||| || Sbjct 1470415 TTTATAGTTATTGTCT-CAATTATCTGCT-TCAATTGATCGACTCCCTC---CGTACCAT 1470361 Query 31490 TACTATCACATCCCTTG---TAGGCTGCACCGAAATGTCGCCATTGAAACCCATAAATAG 31546 |||||| | | || || ||| || ||||| ||||||||||| || ||||| | Sbjct 1470360 AACTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAATTG 1470301 Query 31547 GTCCCAGGTC 31556 | |||||||| Sbjct 1470300 GCCCCAGGTC 1470291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513003459952400