Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq54 113 6e-20 seq5 87.8 2e-12 >seq54 Length=1154455 Score = 113 bits (124), Expect = 6e-20 Identities = 256/378 (68%), Gaps = 14/378 (4%) Strand=Plus/Minus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 |||| || ||||||||||| || | ||| || || ||| | || |||| || ||| Sbjct 77017 ATCTGTCGGTCAAAACGACCAGGTCTAAGCAGTGCTGGATCTAAGACATCCGGACGGTTA 76958 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGT 11560 || || ||||| | | | || ||||| ||||||||||||||||| | | Sbjct 76957 GTCGCAGCAATTATTATTACACCT---TCATTAGACTCAAAGCCATCCATCTCAACTAAT 76901 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG---CGT 11617 || ||||| | |||||||||||| |||||| |||| | | |||| | || || || Sbjct 76900 AACTGATTTAATGTTTGTTCTCTTTCATCA-TTGCCGCC--ACCAAGACCAATGCCACGA 76844 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 || | ||||||||||| || ||||| || || | ||||| || ||||| | | Sbjct 76843 TGTCTACCCACCGCATCTATTTCATCTATAAAAATTATACAAGGAGCATTTTTCTTGCCT 76784 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 ||||| | ||| ||||| | | ||||| ||||| |||||||| || ||||| | Sbjct 76783 TGATCAAACATATCACGAACACGACTTGCACCAACACCCACAAACATTTCAACAAAATCA 76724 Query 11738 GCGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 | ||| | ||| | |||||| ||||| | ||| || || || || || || || | Sbjct 76723 GATCCAGAAATACT-AAAGAATGGCACATTAGCTTCTCCTGCAATTGCACGAGCAAGTAA 76665 Query 11797 GGTCTTTCCCGTACCTGG 11814 || || || || || || Sbjct 76664 AGTTTTACCAGTTCCAGG 76647 >seq5 Length=4157372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| ||||| || || |||||||| |||| ||| || || ||||| ||||| | | Sbjct 2099445 GCCTACCGCGTCTATTTCATCAATAAAGAGAATGCAAGGAGCATTTTTACGGGCCAAAGC 2099386 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||| | ||| || || || | |||||| ||||||||||| || | || | | | Sbjct 2099385 AAACATATCACGCACTCTCGATGGACCCACGCCAACAAACATTTCTAAGAATTCGGAACC 2099326 Query 11743 AGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 |||| || | ||||||||| ||||| | ||| || || | || || || ||||| | Sbjct 2099325 AGAGACAGT-GATGAATGGCACATTAGCTTCTCCTGCAGTCGCCTTTGCAAGTAGGGTTT 2099267 Query 11802 TTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || |||||||| ||| | | | |||||| ||| ||||| ||||| Sbjct 2099266 TGCCAGTACCTGGGGGACCAGTTAACATTGCGCCTTTGGGTATCTTTGCACC 2099215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014689868000