Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq54 89.7 6e-13 seq145 86.0 7e-12 >seq54 Length=1154455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 252/380 (66%), Gaps = 18/380 (5%) Strand=Plus/Minus Query 9518 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9577 |||| || ||||| ||||| || | ||| || || ||| | || ||| || || Sbjct 77017 ATCTGTCGGTCAAAACGACCAGGTCTAAGCAGTGCTGGATCTAAGACATCCGGACGGTTA 76958 Query 9578 GTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAA 9634 ||||| || || | | | |||| |||||| ||||| ||||||||||| || Sbjct 76957 GTCGCAGCAATTATTATTACACCT---TCATTAGACTCAAAGCCATCCATCTCAACTAAT 76901 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG---CGT 9691 | || || | |||||||| | ||||||||| || | | |||| | || || || Sbjct 76900 AACTGATTTAATGTTTGTTCTCTTTCATCATT-GCCGCC--ACCAAGACCAATGCCACGA 76844 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC- 9750 || | ||||| ||||| || ||||| || || | || || || ||||| | || Sbjct 76843 TGTCTACCCACCGCATCTATTTCATCTATAAAAATTATACAAGGAGCATTTT-TCTTGCC 76785 Query 9751 --GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 || ||||| | ||| || ||||| | || || ||||| |||||||| || ||||| Sbjct 76784 TTGA--TCAAACATATCACGAACACGACTTGCACCAACACCCACAAACATTTCAACAAAA 76727 Query 9809 TTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9868 | | | ||| | ||| || ||||||| ||| || ||||| || || || || Sbjct 76726 TCAGATCCAGAAATACTAAAGAATGGCACATTAGCTTCTCCTGCAATTGCACGAGCAAGT 76667 Query 9869 AGAGTCTTACCCGTACCTGG 9888 | ||| ||||| || || || Sbjct 76666 AAAGTTTTACCAGTTCCAGG 76647 >seq145 Length=640502 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/331 (66%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||| || || || |||||||||||||||||||| ||||||| || ||||||||| || Sbjct 132387 GAGACCGGAACTCCTTACATGCTTTACAAAGACGCTTGTAACCGCAAAAGTAATCAACAG 132328 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || || || | || | |||||||||||| | |||| ||| Sbjct 132327 AATGTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATACGTCGGCT 132268 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT--GGATCCAG 105092 || || | || || || || || |||||||| || | | ||||| | | | Sbjct 132267 GAAGAAATAGCAGTTTGCAATCTGGCATCAATTGCGTT----GAATATGTTCGTAACGGC 132212 Query 105093 AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACC 105152 ||| ||| | || ||||| | | |||||| | |||||| | || | | || | |||| Sbjct 132211 AGATAAACA-ATATGATTTTCACAAACTCAAAGAAGTTGCAAAGCTTATAACAAGGAACC 132153 Query 105153 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 105212 | |||| | | || ||| |||| || || | | || | ||||||||| | Sbjct 132152 TCAACAAAATAATCGATGTCAATTACTATCCGCTGCCGGAAGCCAGAAAATCTAATTTAC 132093 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGG 105243 | || |||||||| ||| | || || || || Sbjct 132092 GTCATCGTCCAATCGGTATAGGCGTCCAAGG 132062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244723874200