Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq19 158 1e-33 seq192 152 6e-32 seq15 145 9e-30 seq264 91.5 2e-13 >seq19 Length=2240402 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || |||||||| || || || || || ||| | Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||||||||||||||| || ||||| ||||| ||| Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | |||||||| ||||||||| | || || | || ||| | | || || ||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | ||| | ||| | ||||| |||||||| Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933810 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || ||||| ||||||||| | || ||||| || Sbjct 931748 AATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATC 931807 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 931808 GGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCA 931867 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | ||||||||||| |||||| | || || | || ||| | | || || || Sbjct 931868 GCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAA 931927 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | ||| | ||| | ||||| |||||||| Sbjct 931928 CATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| || || || ||| | ||||| || ||| |||| || | ||| | || || Sbjct 941448 ACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAACGTTAAAGCA 941507 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || |||||||| || ||||||||||||||||||||| | || |||||||| || Sbjct 941508 AAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAA 941567 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | || |||| || || | | ||||| || | ||||||||||| ||||| || Sbjct 941568 CAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATCTACTCTCCAC 941627 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||||| || Sbjct 941628 TTGGTGTTGCGTCTCCGCGGAGG 941650 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || |||||||| || || | || || ||| | Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || ||||| |||||||| || ||||| ||||| ||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| |||||| | || || | || ||| | | || || || Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | ||| | ||| | ||||| |||||||| Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933582 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || | ||||| || || || ||| | ||||| || ||| Sbjct 939661 AATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATC 939720 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | || | ||||| || |||||||| || |||||||||||||| Sbjct 939721 GGATACTATCGAAAACGTTAAAACAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 939780 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || || | || |||| || || | | ||||| || Sbjct 939781 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAA 939840 Query 27585 TGTCCAAAAGGA 27596 | |||||||| Sbjct 939841 CATACAAAAGGA 939852 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || |||||||| || || | || || ||| | Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || ||||| |||||||| || ||||| ||||| ||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || ||| | ||||||||||| |||||| | || || Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGA 932131 >seq192 Length=539225 Score = 152 bits (168), Expect = 6e-32 Identities = 176/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 27398 TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||| ||| |||| || ||||| || || || || |||||||| || ||||||||||| | Sbjct 278195 TTACAATA-TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCG 278253 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | | || | || | |||| | || || || ||||||||||| ||||||||||| | Sbjct 278254 AACCCTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCAC 278313 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 | |||||||| || | ||||| || || |||||| | || |||| ||| || | | | Sbjct 278314 CCGACCAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCG 278373 Query 27578 ACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||| | ||||| |||||||| | ||||| || |||||| | || |||||| Sbjct 278374 ATTATAATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGGA 278429 >seq15 Length=3179940 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| ||||| ||||||||| | || |||||| | Sbjct 2518862 AATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 2518921 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| ||||||||||| || || || ||||||||||| || Sbjct 2518922 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 2518981 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||| ||||| || ||| | || |||| || || || | |||||||| Sbjct 2518982 ACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTATAA 2519041 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | || | || | ||||| |||||||| Sbjct 2519042 CATACAAAAGGAGTCGACATTGCACTTGGTACTCCGTCTCCGCGGTGG 2519089 >seq264 Length=376872 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 || || |||||||| ||| | || ||||||||||| || ||||| | ||||||| Sbjct 175906 AAAGCAAAAATTCACGACGAAGAT---ATTCCTCCAGATCAACAGCGCTTCATTTTTGTC 175962 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||| | || || ||| || ||| | ||||||||||| ||||||||||| || Sbjct 175963 GGTAAGTATCTGGAAGATAGCCGCACCTTGTCAGACTATAATACCCAAAAGGAATTTACG 176022 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || |||||||| || Sbjct 176023 CTCCATTTGGTATTACGCCTTCGCGGAGG 176051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294680819600