Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq19 125 4e-24 seq192 96.9 2e-15 >seq19 Length=2240402 Score = 125 bits (138), Expect = 4e-24 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| |||||||| |||||||| ||||| || || || | ||| ||| Sbjct 941641 AGACGCAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGC 941582 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || |||||||| ||||| || || | || ||| Sbjct 941581 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 941522 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| ||| ||||| ||||||| | || || || || | ||||| |||| Sbjct 941521 TTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATC--CGATGATTCCACCTCCAAA 941465 Query 34666 GTTATCGTTTTACCGGTTAACGTTTT 34691 || |||||||| ||||| || ||||| Sbjct 941464 GTGATCGTTTTTCCGGTCAAAGTTTT 941439 Score = 105 bits (116), Expect = 4e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || ||||||||||| || || || |||||||| || || || ||||| || Sbjct 939651 AGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 939592 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | | ||| | ||||| || ||||| || ||||| ||||| || || || ||||| || Sbjct 939591 CCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCT 939532 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| |||||||| | ||| || || ||| || |||| ||| Sbjct 939531 TTATCT-TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGT 939473 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||| || || || || ||||| || | |||||| || Sbjct 939472 GATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATTTT 939431 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || |||||| ||||| || ||||| || | || || Sbjct 933801 AGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGT 933742 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| ||||||||||| || |||||||| || || || || | || ||| Sbjct 933741 CCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCC 933682 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | ||| ||||| ||| ||||| | ||| Sbjct 933681 TTGTC-CTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGT 933623 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| |||||||| ||||| Sbjct 933622 GATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || |||||| |||||||| ||||| || | || || Sbjct 931966 AGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGT 931907 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || || ||||| || ||||| || || || || || | || ||| Sbjct 931906 CCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCC 931847 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTC--TCCACTTCCACG 34665 || ||| ||| ||| | |||||| | || || || || | || ||||||| Sbjct 931846 TTATCT-TGAATTTTAGCTTTAACATTTTCGATAGTATC--CGATGGTTCAACTTCCAAA 931790 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || ||||| || ||||| ||||||||||| || ||||| || Sbjct 931789 GTAATAGTTTTGCCAGTTAATGTTTTCACAAAGATTTGCATTTT 931746 >seq192 Length=539225 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||||||| | ||| | ||| || |||||||| |||||||| || Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || ||||| || || || || || ||||| || || Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| ||||| ||||| | || ||||| | || || Sbjct 278308 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 278249 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || |||| ||||| |||||||||||||| ||| Sbjct 278248 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTG 278198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721142133765