Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq15 183 3e-41 seq192 176 4e-39 seq19 176 4e-39 seq884 109 5e-19 >seq15 Length=3179940 Score = 183 bits (202), Expect = 3e-41 Identities = 182/233 (78%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || ||||| |||||||| | ||||| || || ||| Sbjct 2518863 ATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCC 2518922 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| || ||||||||||| || || |||||| Sbjct 2518923 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAA 2518982 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| || | ||| ||||||||||||||||| | || |||| ||||| || || Sbjct 2518983 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA-TGGACGCACGTTATCCGACTATAA 2519041 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||| |||||||||||||| || || ||||| | ||| | || |||||||||| Sbjct 2519042 CATACAAAAGGAGTCGACATTGCACTTGGTACTCCGTCTCCGCGGTGGCATAA 2519094 >seq192 Length=539225 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || |||||| | || |||||||| || ||||| || Sbjct 278202 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 278261 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || ||||| |||||||| || || |||||||| || Sbjct 278262 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 278321 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| || ||||||||||| || || | |||||||| || Sbjct 278322 CAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAAT 278381 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || ||||||||| | || ||||||||||| ||||| Sbjct 278382 ATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428 >seq19 Length=2240402 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | || || || ||||| || || ||| Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| || |||||||||||| | ||| | ||||||||||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| || |||||||| | ||| |||| ||||| || Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGTAT 933813 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | || || | ||||| || || ||| Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| ||||| || || || ||||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| |||||||||||| | ||| | |||||||||||| Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| || |||||||| | ||| |||| ||||| || Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGTAT 933585 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || ||||| |||||||| | ||||| ||||| || Sbjct 931749 ATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 931808 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| || ||||| || || || ||||| Sbjct 931809 GATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAG 931868 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| |||||||||||| | ||| | |||||||||||| Sbjct 931869 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 931928 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| || |||||||| | ||| |||| ||||| || Sbjct 931929 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGTAT 931978 Score = 136 bits (150), Expect = 3e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| | || || | ||||| || || ||| Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| ||||| || || || ||||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| |||||||||||| | || | |||||||||||| Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 27168 ATTCAAAAGGAGT 27180 ||||| ||||||| Sbjct 932157 ATTCAGAAGGAGT 932169 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||| | || || || || |||| || || |||| || | || || || || ||| Sbjct 939434 ATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCATCC 939493 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||| |||||||| | ||||| |||||| Sbjct 939494 GATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGATCAA 939553 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || |||||||| || ||| | | || | ||||| |||||| Sbjct 939554 CAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTCCGACTACAAC 939613 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||| | ||||||||||| ||| | || ||||| || Sbjct 939614 ATTCAGAAAGAATCGACGCTCCATTTGGTTTTACGTCTCCGTGGTGGAAT 939663 >seq884 Length=18444 Score = 109 bits (120), Expect = 5e-19 Identities = 231/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 135314 CGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAAGGTGCT 135373 || ||||||||||||||||| |||| |||||| || |||||||| | | |||||| Sbjct 3994 CGGGAATTGGCGGACAATTTCTGTTTTTATAATGAAAATTATGATAGTTTTGAAGGTTTA 4053 Query 135374 CCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACTT--TTGTT 135431 | | ||| ||| ||||| | ||| || | | | | || || | ||| | Sbjct 4054 CAAGATTGGTCGCGTAAAACTCTAAACGAACAT-CGTAAGGAC-CAACGATCTCCTTGCT 4111 Query 135432 ACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGGCACAAC 135491 | | ||| ||| || || || || || || |||||||| | || |||| Sbjct 4112 ATAGCTTAGAGGAATTCGAGCAGGCTCGCACTCACGATGATTTGTGGAATTCAGCTCAAC 4171 Query 135492 GGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGA 135551 ||| | | |||||| || ||||||||||| ||| |||| ||||||||||| ||||||| Sbjct 4172 TGCAATTGATGCGAGAGGGTAAAATGCACGGTTTTTTGCGTATGTATTGGGCTAAAAAGA 4231 Query 135552 TATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATT 135611 | || ||||||||| | |||| ||| || | || | || |||| |||||| Sbjct 4232 TTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAATTTTCGCTACTTTTAAATGATA 4291 Query 135612 ACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 |||||||| |||||| ||| | ||||| || || ||| Sbjct 4292 GATACAGTTTGGATGGAACGGATCCCAATGGTTATGTCGGT 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906412561600