Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq19 138 8e-28 seq15 116 3e-21 seq192 113 3e-20 >seq19 Length=2240402 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||||||||| | ||||| ||| |||||| | || || ||| | Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAAC-C 931804 Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || || || | ||| || ||| ||||| || || |||||| |||| Sbjct 931805 ATCGGATACTATCGAAAAT--GTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCA 931862 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || |||||||| || || |||||||| |||| ||||| |||||||||| Sbjct 931863 GATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGAT 931922 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || ||| || ||||||||||| | ||| |||| || || Sbjct 931923 TACAACATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| || || || | || ||||| || Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || ||||| |||||| |||| || ||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || |||||||| || || |||||||| |||| ||||| |||||||||||||||| Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||| || ||||||||||| | ||| |||| || || Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933582 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| || || || | || ||||| || Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| ||||| ||||| |||||| |||| || ||| Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || ||||||||||| || |||||||| |||| ||||| ||||||||||||||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||| || ||||||||||| | ||| |||| || || Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933810 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| || || || | || ||||| || Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || ||||| |||||| |||| || ||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || |||||||| || || |||||||| |||| ||||| ||||||||||||||| Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 27970 ATCCAAAAAGAG 27981 || || || ||| Sbjct 932157 ATTCAGAAGGAG 932168 >seq15 Length=3179940 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| |||||||||||||| || |||||||||||||| ||| |||||| | || || Sbjct 2518854 AATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTT 2518913 Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 || ||||| | | || ||||| ||||| || |||||||| |||| Sbjct 2518914 GAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCT 2518973 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || || ||||| || ||||| || || ||||||||||| || | ||||| || ||| Sbjct 2518974 CCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCC 2519033 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || ||||| ||||| ||| || ||||| ||||| | ||| | || || ||| Sbjct 2519034 GACTATAACATACAAAAGGAGTCGACATTGCACTTGGTACTCCGTCTCCGCGGTGGC 2519090 >seq192 Length=539225 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| || || || || || || |||| |||||| | Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| || || |||||||| || |||| || Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || ||||| |||||||| |||||||| || | |||| ||||||||||| Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| || ||| | || ||||||||||| || || Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852836754035