Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12]
2,205 sequences; 370,264,922 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq19 138 8e-28
seq15 116 3e-21
seq192 113 3e-20
>seq19
Length=2240402
Score = 138 bits (152), Expect = 8e-28
Identities = 172/233 (74%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
||||||||||| ||||||||||| | ||||| ||| |||||| | || || ||| |
Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAAC-C 931804
Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
| || || || | ||| || ||| ||||| || || |||||| ||||
Sbjct 931805 ATCGGATACTATCGAAAAT--GTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCA 931862
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| |||||||| || |||||||| || || |||||||| |||| ||||| ||||||||||
Sbjct 931863 GATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGAT 931922
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || ||| || ||||||||||| | ||| |||| || ||
Sbjct 931923 TACAACATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| | ||||| || || || | || ||||| ||
Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| | | || ||||| || || ||||| |||||| |||| || |||
Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||||| || |||||||| || || |||||||| |||| ||||| ||||||||||||||||
Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || ||| || ||||||||||| | ||| |||| || ||
Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933582
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| | ||||| || || || | || ||||| ||
Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| | || ||||| ||||| ||||| |||||| |||| || |||
Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
|| || || ||||||||||| || |||||||| |||| ||||| |||||||||||||||
Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || ||| || ||||||||||| | ||| |||| || ||
Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933810
Score = 98.7 bits (108), Expect = 7e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| | ||||| || || || | || ||||| ||
Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| | | || ||||| || || ||||| |||||| |||| || |||
Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||||| || |||||||| || || |||||||| |||| ||||| |||||||||||||||
Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156
Query 27970 ATCCAAAAAGAG 27981
|| || || |||
Sbjct 932157 ATTCAGAAGGAG 932168
>seq15
Length=3179940
Score = 116 bits (128), Expect = 3e-21
Identities = 168/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840
|||| |||||||||||||| || |||||||||||||| ||| |||||| | || ||
Sbjct 2518854 AATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTT 2518913
Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900
|| ||||| | | || ||||| ||||| || |||||||| ||||
Sbjct 2518914 GAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCT 2518973
Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960
|| || ||||| || ||||| || || ||||||||||| || | ||||| || |||
Sbjct 2518974 CCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCC 2519033
Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|| || ||||| ||||| ||| || ||||| ||||| | ||| | || || |||
Sbjct 2519034 GACTATAACATACAAAAGGAGTCGACATTGCACTTGGTACTCCGTCTCCGCGGTGGC 2519090
>seq192
Length=539225
Score = 113 bits (124), Expect = 3e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| |||||||| ||||| || || || || || || |||| |||||| |
Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||| | | || || ||| || || |||||||| || |||| ||
Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| || ||||| |||||||| |||||||| || | |||| |||||||||||
Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || |||||||| ||| || ||| | || ||||||||||| || ||
Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG 278428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355852836754035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |