Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq19 134 3e-26 seq15 113 1e-19 >seq19 Length=2240402 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 || ||||| ||||| || || | | || | |||||||||| ||| ||||| || ||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || | || || ||||| ||||||| ||||||||||| ||||| ||| ||| |||||| Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGTTTTAACGTTT 939733 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 ||||| || || || ||| ||||| | ||||||||| ||||| || | ||| || ||| Sbjct 939732 TCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGACA 939673 Query 211104 AACACCTGCATT 211115 || | |||||| Sbjct 939672 AATATTTGCATT 939661 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||| || || ||||| ||||| || || | | || | |||||||||| ||| Sbjct 941627 GTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTG 941568 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| || ||||| | || || ||||| ||||||| ||||||||||| ||||| || Sbjct 941567 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTT 941508 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||||||||| || || || ||| ||||| | ||||||||| ||||| || Sbjct 941507 TGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGT 941448 Query 211091 GAGAGTCTT 211099 | ||| || Sbjct 941447 CAAAGTTTT 941439 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | || | || ||||| || || ||||| ||||| | | ||| Sbjct 933576 CGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGACAAGGTG 933517 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| ||||||| |||||||| || || || | ||||| || || || |||| ||| Sbjct 933516 CGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCT 933457 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| || |||||||| || ||||| || || || || | Sbjct 933456 TCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGACTTCTAAG 933397 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | || || ||||| | ||||| Sbjct 933396 GTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || ||||| || ||||| || || | || || | |||| ||| | ||| Sbjct 939636 TGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCTAACTGT 939577 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | |||||||| || || || |||||||| || || || || || Sbjct 939576 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTA 939517 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || || || || || || |||||||| | ||||| || || || || Sbjct 939516 GTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTC 939457 Query 211092 AGAGTCTTTACAAACACCTGCATTTTA 211118 | ||||| || || |||||||||||| Sbjct 939456 AATGTCTTCACGAAGACCTGCATTTTA 939430 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | || | || ||||| || || || || ||||| | | ||| Sbjct 933804 CGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGACAAGGTG 933745 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| ||||||| ||||| || || || || | || || || || || |||| ||| Sbjct 933744 CGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGAATACCT 933685 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| || || || |||||||| |||||||| || || || || || Sbjct 933684 TCCTTGTCCTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGG 933625 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | || || ||||| | ||||| Sbjct 933624 GTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210922 ACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGA 210981 |||| || || ||||| ||||| | | || | ||| ||||||| |||||||| || | Sbjct 932169 ACTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAA 932110 Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 | || | ||||| || || || |||| ||||||||||| || ||||| || |||| Sbjct 932109 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGT 932050 Query 211042 TTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 |||| || ||||| || || || || | ||||| ||||| || || | || || | Sbjct 932049 TTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGA 931990 Query 211102 CAAACACCTGCAT 211114 |||| | ||||| Sbjct 931989 CAAAAATTTGCAT 931977 >seq15 Length=3179940 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||| |||||||| || | | || | ||||||||||| || ||||| Sbjct 2519059 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCA 2519000 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| || ||||||| ||||| || ||||| || || || Sbjct 2518999 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 2518940 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || ||||| || ||||| || | ||| || || || || || ||||| Sbjct 2518939 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 2518880 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||||| Sbjct 2518879 TTAACGAAAATTTGCATTTT 2518860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159119252144825