Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15 161 7e-35 seq19 149 4e-31 seq192 147 1e-30 seq69 86.0 4e-12 >seq15 Length=3179940 Score = 161 bits (178), Expect = 7e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||||||||| || || || ||||| || ||| | |||||||| | Sbjct 2518860 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 2518919 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || |||||| || |||||||| | || |||||| Sbjct 2518920 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 2518979 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || || ||||||||| ||||||| | |||||| ||| ||| || Sbjct 2518980 CAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGACTAT 2519039 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||||| ||||| ||||| || || || Sbjct 2519040 AACATACAAAAGGAGTCGACATTGCACTTGGT 2519071 >seq19 Length=2240402 Score = 149 bits (164), Expect = 4e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || || ||||| || ||| | |||||||| | Sbjct 931746 AAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 931805 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| ||| | |||| | ||||| | |||| || || || |||||| | || ||||| Sbjct 931806 TCGGATACTATCGAAAATGTTAAAGCTAAAA-TTCAAGATAAGGAAGGTATTCCCCCAGA 931864 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||||| || ||||| ||||| ||| ||||||||| |||||| || |||||| Sbjct 931865 TCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTA 931924 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || ||||| ||||| ||||| || || | |||| || || Sbjct 931925 CAACATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || || || ||||| | ||||| || | | Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || || ||| ||||| |||||| | || |||||||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||| ||| ||||||||| |||||| || |||||||||| Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| ||||| ||||| || || | |||| || || Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933582 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||| | ||||| || || | || || ||||| ||||| | || ||||| Sbjct 939429 TTAAAATGCAGGTCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGC 939488 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | || ||| |||| ||| ||||||| |||||| || |||||||| || || ||| Sbjct 939489 CATCCGATACTATTGAGAATGTTAAAAC-TAAAATTCAAGATAAAGAAGGAGTCCCACCA 939547 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||| ||||| || ||||| |||||||| | ||| | | ||||| | ||| Sbjct 939548 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTAGAAAATGGCCGCACACTCTCCGAC 939607 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 |||||||| || ||||| || || | ||||| |||||| Sbjct 939608 TACAACATTCAGAAAGAATCGACGCTCCATTTGGTTTTA 939646 Score = 129 bits (142), Expect = 4e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| | || ||||||||||||||| | || || || || | Sbjct 939661 AATGCAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATC 939720 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||| | | ||| ||||||| |||||| ||||| |||||| | || ||||| | Sbjct 939721 GGATACTATCGAAAACGTTAAAAC-AAAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 939779 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| |||||||| ||||||| | ||||| || || |||| Sbjct 939780 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACA 939839 Query 23789 ACATACAAAAAGA 23801 |||||||||| || Sbjct 939840 ACATACAAAAGGA 939852 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || || || ||||| | ||||| || | | Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || || ||| ||||| |||||| | || |||||||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||| ||| ||||||||| ||||||||| |||||||||| Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 23791 ATACAAAAAGAGT 23803 || || || |||| Sbjct 932157 ATTCAGAAGGAGT 932169 Score = 116 bits (128), Expect = 3e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATA 23685 ||||| | || ||||||||||||||| | || || || || |||| ||| | |||| Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 23686 TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTT 23745 | ||| |||||| ||||| |||||| | || ||||| || |||||||| || ||| Sbjct 941499 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 941558 Query 23746 GCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCC 23805 || |||||||| ||||||| | ||||| || || |||||||||||||| || || Sbjct 941559 GCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATCT 941618 Query 23806 AC 23807 || Sbjct 941619 AC 941620 >seq192 Length=539225 Score = 147 bits (162), Expect = 1e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || |||||||| || || || || Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| ||||| || ||| |||||||| || | || || || Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || || || || ||||| || ||| ||||||| | ||||| || |||||| Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841 || || |||||||| ||||| |||||| | || || | |||||||| ||| || Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGGAGCA 278432 >seq69 Length=1091995 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| | ||||| || || ||||| | || | || | Sbjct 837269 AAAATGCAGATTTTCGTGAAAACGTTAACGGGCAATACCCTCACTTTAGATGCCGAACCG 837328 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 || || ||| |||| || |||||| | | ||| || || || || | || ||| | Sbjct 837329 ACCGATACTATTGAGAAGATTAAAGC-GGAGATTCAGGATAAGGACGGCATCCCACCAAA 837387 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| || || || | ||||||||| || || ||||| | |||| ||| | || Sbjct 837388 TCAACGCCGATTGATTTATGCCGGCAAGCAGCTAGAAGATGGTTGCACGTTAATGCACTA 837447 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGC 23830 ||||||||||| | || || | ||| | ||||| | |||| Sbjct 837448 TAACATACAAAAGGGCTCGACTATCCATATGATTTTACGTTTGC 837491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000516520140