Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq234 309 3e-79 >seq234 Length=462357 Score = 309 bits (342), Expect = 3e-79 Identities = 504/714 (71%), Gaps = 14/714 (2%) Strand=Plus/Minus Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 ||||| || || || ||| |||||||||| | || ||| ||||| ||| || |||||| Sbjct 280938 AGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTGTTCATGCCAATT 280879 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || || |||| || | |||||||||||||| ||| || | ||||| ||||| ||| Sbjct 280878 AAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATT 280819 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 || || || |||||| ||||| | || || | | ||||| ||| |||| Sbjct 280818 ATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCA 280759 Query 4554 AAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 || ||||| ||||| ||||| || | || || ||| ||| ||||| || ||||| || || Sbjct 280758 AATTCACAGTGCAAGCCTTCATCGCGTGATA-TCATTTCATTAGAGAATGTTAAACCTGG 280700 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||||| || | || || ||||||||||| | || || ||| ||||||||| || Sbjct 280699 CATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAATATACC 280640 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 ||| ||||| || || |||| || || ||| || ||| | | | || ||| Sbjct 280639 TTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAATGCGATGATA-TCC 280581 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | || ||||| | || || |||||||| | || ||||| | || || ||||||| Sbjct 280580 AAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATA 280521 Query 4792 ---ATTTACTTT-TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 ||| || || ||| || | ||| |||| || || || |||| ||||||||| Sbjct 280520 GATATTCACGTTCTTTTTCATC---CATGA-TATATGTTTCGATAAGTAAACTATACATT 280465 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 || || || | |||||| || ||||| ||||| || |||||||| | |||||| |||| | Sbjct 280464 TCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCGGTTATT 280405 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 ||||| || | |||||| ||| ||||| || || || || ||||| || || ||| Sbjct 280404 TGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCA 280345 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTTAAGTTTTTTCCAGTG 5026 ||||| ||||||||||| || ||||| | | ||||| | |||||| ||||| | Sbjct 280344 AAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCGCTTAA-CCGATTCCAATC 280286 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | || ||||||| | |||||| || ||| |||||||||| || |||||||| Sbjct 280285 GTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGCTTCCGC 280232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038123709265