Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq145 526 3e-144 seq234 293 3e-74 seq132 111 2e-19 >seq145 Length=640502 Score = 526 bits (582), Expect = 3e-144 Identities = 1399/2119 (66%), Gaps = 50/2119 (2%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | ||||||||| || ||| | ||| || || || | |||||| |||||||| Sbjct 131321 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCG 131380 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||||| || ||||| || || ||||| || | | ||| ||||||||| Sbjct 131381 GTTTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGT 131440 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || |||| || ||||| | || |||||||| ||||| ||||| || | |||| | ||| Sbjct 131441 TCAGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCC 131500 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 || || || | | ||| | ||||||||||| ||||| | | || ||| ||| Sbjct 131501 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATA--- 131557 Query 77013 TCTGGAAGGTTTG-------TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 |||| |||| || | ||||| || || || | || || | ||| || || Sbjct 131558 -CTGGCAGGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT 131616 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | ||||||||| | | || || ||| || |||| | |||| |||| |||| Sbjct 131617 CATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTAC 131676 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| || ||||||| ||| | || ||||||||||| || ||||| || | ||| Sbjct 131677 GATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGA 131736 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||||| || | ||||||||||||||| || || ||||| || || |||| ||| Sbjct 131737 CTCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGA 131796 Query 77246 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 77305 ||| | | |||| || | || | ||||| ||| ||||| ||| ||||| | Sbjct 131797 ATTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGATCAGT 131856 Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATA 77365 ||| |||||| | ||| ||||| || || || |||||| | || | ||| Sbjct 131857 AGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATA 131916 Query 77366 TGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATA 77425 |||||| || || || | | || || | || |||||| ||||| || || |||||||| Sbjct 131917 TGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCACCGTAATA 131976 Query 77426 AATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAAT---ACTATCAAACGGATA 77482 |||||||| ||||| | ||||| | | | | | || | || || | ||||| Sbjct 131977 TATTGTTTCAAAAATTTGTTTATTTA-AGC--GGCCAGCATTTTCGCTTTCGTAGGGATA 132033 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | | ||| | || || || ||||| || || || ||||| || || | ||| | Sbjct 132034 ACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACG 132093 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 ||| || || | ||||| || | ||||| ||||| | || || ||||| ||||| Sbjct 132094 TAAATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGTTGAG 132153 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT-- 77660 || || | | || | || || || ||||| |||||||| || | |||| Sbjct 132154 GTTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGC 132213 Query 77661 -ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTT 77719 | || ||||| ||||| || || ||||| ||||| |||||||||| || | ||| Sbjct 132214 CGTTACGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGA 132273 Query 77720 GGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779 | ||||| | || || ||||| | ||||| ||||| |||||||| | ||| ||||| Sbjct 132274 CGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTG 132333 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 || || || || || | ||| || ||||| || | ||||| ||||| || | || Sbjct 132334 ATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCCACTTG 132393 Query 77840 TGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGC----C 77895 | | || | ||| | | | | ||||| | || | ||||| |||| | Sbjct 132394 GGCGCTGCATATTGCGAACCACAAGTCACGAGCTTGT---ATTGTTTTGT-TCGCTTTAC 132449 Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 ||| |||||||| | || | ||||||| ||||| |||| || ||||| | Sbjct 132450 CCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCCATAAACTTCTTCCAAGC 132509 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 ||||||||| || |||||||| | ||||| | |||| ||| |||| |||||| | Sbjct 132510 CAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGCCTCCACTCTTTTCATGA 132569 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 | ||||| |||||||| |||||| ||||| || || | | || || || || || | Sbjct 132570 ACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACGATCCTCCTCTTTACCCG 132629 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||| ||||| | || ||||| || | |||||| | ||||| || |||| ||||| | Sbjct 132630 TATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAG 132689 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | | || || ||||| ||| || || || | ||| | ||| || || | | Sbjct 132690 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 132749 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 | |||||| |||| || ||||| ||| | | | ||||| | | | | || Sbjct 132750 AACGCAACATAGGAACAAGACCGTCAGACACATCGCTATTACCAGATGTCTTAGTCCCTT 132809 Query 78256 TTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 |||| || || | ||| || |||||||| || ||| |||||| ||| ||| | Sbjct 132810 TTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGACTTAGAAATTTTAGCAC 132869 Query 78316 A-ACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAA 78373 | || | | || || ||||| || | ||| || ||| |||| ||| || Sbjct 132870 ATTGGTCTACAGCCTTCATA-ATACCATCAACGGAGTCTTCTGGCATAGTTAGCAAG-AA 132927 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||| |||| ||| | | | || | ||| |||||| || || || ||||| || Sbjct 132928 GCAGGACGACAATTGTGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGT 132987 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG--A 78491 ||| | | || | ||||| || ||||||||||| | ||| |||| ||| | Sbjct 132988 AAAGTAACGCCCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCG 133045 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 ||||| || | || |||||||| |||||||| || |||| || || | || ||| Sbjct 133046 TGAATGCCAATAGCGACACGCATTAACATATGTTGTGGTCGCTCCACAATTTTCCCATTA 133105 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 || || |||||||| || ||| ||||||||||| |||||| | || || ||| || Sbjct 133106 ATCTTTAACAAGTAAGACCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCG 133165 Query 78612 CTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATG--A 78669 | || ||||||||| ||||||| | | ||| | || | |||| || || | Sbjct 133166 CGATCATAAATAATAGCAGAATTCAATCGATCAGCATGTTGTCTTACAA---CCTTGTAA 133222 Query 78670 CAGTAGT-TGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAA 78728 | | | || |||||||| || | | ||||| || ||| || | ||||| Sbjct 133223 TGGAAATCCGATATAATAGGCGAAGGGAAGCCATT------ATCTTCATTGTGATATAAA 133276 Query 78729 TCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATT 78788 || || || ||| |||| ||| |||||||| || || | || || || || || Sbjct 133277 TCAGTTATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGCAAGTTTGACACTGCAATA 133336 Query 78789 CTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTGC 78847 | ||| |||| ||||||||| | || || | || || || | ||| || |||| || Sbjct 133337 CGTGCGGCTAAAATAGCATAGTGCGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCAGC 133395 Query 78848 CGCTAAAATATCTAACTCT 78866 |||||| |||| || ||| Sbjct 133396 AGCTAAATTATCCAATTCT 133414 >seq234 Length=462357 Score = 293 bits (324), Expect = 3e-74 Identities = 504/726 (69%), Gaps = 17/726 (2%) Strand=Plus/Minus Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || |||||| | | || | ||| ||||| ||||||||||| | ||| |||| | Sbjct 280950 CCCAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTGCACATACTTTCGCTG 280891 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || | | ||||||| ||||| || | |||||||| ||| || | || Sbjct 280890 TTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACG 280831 Query 48075 GCATCCACTATTAT--CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAA 48132 ||||| |||||| | | | ||||| | | ||| ||| | | ||||||||||| Sbjct 280830 GCATCTGTTATTATTTCCAAAAT-CCGTT-CTTTACTCGGTTTTTGTATCAAATGTTTAA 280773 Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 ||||||| ||||| ||||| || | |||||||| | || | ||| ||||| | Sbjct 280772 ACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 280713 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 |||| | ||| ||||||| ||||||||| || ||||||||||| | ||||| ||| Sbjct 280712 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCAC 280653 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----T 48308 ||||||||| ||||| ||||| || || || | | | ||| || || | || | Sbjct 280652 TAAAGAATATACCTTCGACGGCAGCGAAAGCTATTACACGCTCACCAAAATTAGCCGAAT 280593 Query 48309 TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 || || |||||| | | ||||| || ||||||||||| || | |||||||| || Sbjct 280592 GCGATGA-TATCCAAGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCA 280534 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGA 48428 || |||||||| ||| | | ||| || ||| | | || || || || | | | Sbjct 280533 ATGGCATTAAATAGATATTCACGTTCTTTTTCATCCATGATATATGTTTCGATAAGTAAA 280474 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||||||||| ||||| | |||||| || || || ||||| || ||||| || | ||| Sbjct 280473 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 280414 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || || || || ||||| |||||||||| | ||||||||||| || || ||||| Sbjct 280413 TCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 280354 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT-- 48606 || |||||||| || || |||||| ||||||| | |||| | ||| || Sbjct 280353 GATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAA----TGCCGTTCGCCGTCGCTTAA 280298 Query 48607 --TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 |||||| || | || ||||| || | ||| || || ||||| |||||||| || || Sbjct 280297 CCGATTCCAATCGTCCATGTCTTTAGAGAGATCAACCTCCTCAGCAGTCCAAAAAGAGGC 280238 Query 48665 CTCTGC 48670 || || Sbjct 280237 TTCCGC 280232 >seq132 Length=759884 Score = 111 bits (122), Expect = 2e-19 Identities = 377/577 (65%), Gaps = 18/577 (3%) Strand=Plus/Plus Query 78456 TTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCAT 78514 ||||| ||||||||||||| || ||||| || | ||||| || | || |||||||| Sbjct 1 TTGTAAGTTTCAATAGCTGCCTCAATGTCGTCACCG-TGAATGCCAATGGCAACACGCAT 59 Query 78515 CAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 |||||||| || |||| || || | || ||| || ||||||||||| || ||| Sbjct 60 TAACATATGTTGTGGTCGCTCCACAATTTTCCCATTAATCTTCAACAAGTAAGACCGTTC 119 Query 78575 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 |||||||| || |||||| | ||||| ||| || | || |||||||| | ||||| Sbjct 120 TAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCCCGATCATAAATAATGGCCGAATT 179 Query 78635 TAGTTTATCTTTGTATTTGGTAACAATATCCATG--ACAGTAGT-TGAAATAATAGGAGA 78691 || ||| | | | |||| || || | ||| | || |||| ||| || Sbjct 180 CAGCCGATCAGCATGCTCTCTTACAA---CCTTGTAATGGTAATCCGATATAACAGGGGA 236 Query 78692 TCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAG 78751 | | ||||| || ||| | | || ||| || || ||| |||| Sbjct 237 ATGAAGGCCATT------ATCTTCATTTTGATGTAGATCAGTTATCACTTCAGAGAATAC 290 Query 78752 tttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATC 78811 ||| |||||||| || || | || |||||||| || | || |||| ||||||||| || Sbjct 291 TTTCTTTGTTTCTTTATGCAAGTTTGATACAGCAATGCGAGCGGCTAAAATAGCATAGTC 350 Query 78812 AGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAG 78870 || || | || || || | ||| || |||| || |||||| |||| || ||| | Sbjct 351 TGGGTGATCGGTGGT-CATGCAGGCCGCAGTTTCGGCAGCTAAATTATCCAATTCTTGCG 409 Query 78871 TTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAA 78930 | ||||| || || | || | ||||||| | || | ||||| || | Sbjct 410 TGGTGACGCCGCAGTACAACCCGCTTACTACTTTCAAAGTAATGGCGGTCGGATCAACGA 469 Query 78931 ACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATGTGATTTTATC-AAATATA 78989 | || | || | ||||| ||||| || || | | || ||||| || |||| || Sbjct 470 AATCCATATTAAGACCATAGCATAACTTCTGGATTCTGAAAGTTATTTTGTCGAAATGTA 529 Query 78990 ACATTCTCCTTGCATCCATTTCGTTTAATAACGAACA 79026 |||| | ||| | |||| |||||| | ||||||| Sbjct 530 CCATT-TGCTTACGACCATCTCGTTTCACCACGAACA 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649653191200