Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq15 122 7e-23 seq19 116 3e-21 seq192 114 1e-20 >seq15 Length=3179940 Score = 122 bits (134), Expect = 7e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 111089 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAA 111148 ||| | |||||||||||||||| || ||||| | || |||||||| ||||| ||||| Sbjct 2518852 AGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 2518911 Query 111149 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111208 || || ||| || ||| | || || |||||| || ||||||||| ||| Sbjct 2518912 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 2518971 Query 111209 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111268 | ||||||||| | | |||| || |||||||||||||||||| || | Sbjct 2518972 CTCCAGATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTAT 2519031 Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||| ||||| |||||||| || || ||| | || || || | ||||| |||||||||| Sbjct 2519032 CCGACTATAACATACAAAAGGAGTCGACATTGCACTTGGTACTCCGTCTCCGCGGTGGCA 2519091 >seq19 Length=2240402 Score = 116 bits (128), Expect = 3e-21 Identities = 170/239 (71%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 111089 AGAGTTTAAAA-ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAA 111147 ||| ||||||| |||||||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct 931737 AGATTTTAAAAAATGCAAATCTTTGTGAAAACATTAACTGGCAAAACTATTACTTTGGAA 931796 Query 111148 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111207 ||||| ||| || | | | || ||| |||||| || || ||||| || Sbjct 931797 GTTGAACCATCGGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATT 931856 Query 111208 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111267 ||| ||||| ||| | | |||| ||| ||||| ||||||||||| || || Sbjct 931857 CCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTG 931916 Query 111268 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||| || || || || || || ||| | ||||| || | |||||||||||||| Sbjct 931917 TCCGATTACAACATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 931975 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||||||||| ||||| ||||| ||||| ||| | ||| || || | Sbjct 933356 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 933415 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || || ||| ||||| ||||| ||||| ||||| Sbjct 933416 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 933475 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| ||||| ||||||||||| || || ||||||| || Sbjct 933476 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAC 933535 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || ||| | ||||| || | |||||||||||||| Sbjct 933536 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933582 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||||||||| ||||| ||||| ||||| ||| | ||| || || | Sbjct 933584 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 933643 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| ||||| ||||| ||||| ||||| Sbjct 933644 GACACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 933703 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| ||| || || ||||||||||| || || ||||||| ||| Sbjct 933704 CAGCGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 933763 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || ||| | ||||| || | |||||||||||||| Sbjct 933764 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 933810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||||||||| ||||| ||||| ||||| ||| | ||| || || | Sbjct 931977 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 932036 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || || ||| ||||| ||||| ||||| ||||| Sbjct 932037 GACACTATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 932096 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| ||||| ||||||||||| ||| || ||||||| || Sbjct 932097 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACTTTGTCCGATTACAAC 932156 Query 111280 ATACAAAAAGA 111290 || || || || Sbjct 932157 ATTCAGAAGGA 932167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111115 AAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAG 111174 ||||| |||||||| ||||| || || |||| |||| | ||| || | | | Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 111175 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111234 || ||| |||||| ||||| ||||| |||| || || || | | || | | Sbjct 941499 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 941558 Query 111235 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111294 || |||||||| ||||||||| || || | || || || |||||||| |||||| Sbjct 941559 GCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATCT 941618 Query 111295 ACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||||||||| ||||| || Sbjct 941619 ACTCTCCACTTGGTGTTGCGTCTCCGCGGAGG 941650 >seq192 Length=539225 Score = 114 bits (126), Expect = 1e-20 Identities = 172/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 278199 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 278258 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | |||||| || ||| |||||||| || |||| ||| Sbjct 278259 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 278318 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||| | | |||| || || || |||||||||||| | || || |||||||| Sbjct 278319 CAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 278378 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111336 ||||| ||||||||||| || ||||| | ||||||||| |||| ||||| | ||| || Sbjct 278379 AATATTCAAAAAGAATCCACCTTACATCTTGTGTTGCGTTTGCGAGGTGG-AGCAAAAAA 278437 Query 111337 ACG 111339 ||| Sbjct 278438 ACG 278440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421799864483080